Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01269 ATGGTTTCGCTGGAGGAATCACGGTCGAATTCCAGCCGTTTCCCCTTGGCCAGGAGTTACCAGTACCACTCCTCGGTTTCGTCCAAAGCGCAGCGTCACATCGGAAGGTCCATGCGAACGATACGCTCCAGTTTTTTCCAAGATGACAGCAGCAGCTGCTCCTTTACTGAGAAATCTACATGTCTGTCGGAGAACCTCACCGACTCCGTCGTCGACCTCCACCTCGGCGAACTCGCGTCGCGGAATAATAAATCTGTCCAATCCTCTCCCGCGGAGGAGGACCTCCTCGACCTCTCCCAGGCCTTCAGCGACTTCTCTGCCTGCAGCAGTGACATCTCCGGCGAGCTACAGCGCCTCGCGACTCTCCCGTCGCCCGAATGCGCGCAGAAGAGCGATACTTCCGGCGAGGTGGAGCCGGAGCTGGAGCCCTGCATGGGGTTCCTGCAGCGGGAGAGCTTCTCTACGGAAATTATCGAGAGCATTTCGCCGGAGGATCTCCAGCCGACCGTGAAGATTTGCATAGACGGTCTCCAGTCGCAGTCGCTGGCAGTGAAGCGCTCCGCCGCGGCGAAACTCCGACTGCTAGCGAAGAACCGCGCCGACAACCGCGTCCTGATCGCCGAGTCCGGCGCGGTGCCGGTCCTCGTTCCACTTCTCCGGTGCAGCGATCCATGGACGCAGGAACACGCAGTCACCGCGCTATTAAACCTCTCTCTCCACGAGGACAATAAAATGCTGATAACCAATGCCGGAGCAGTGAAGTCGCTGATTTATGTGCTGAAGACGGGAACGGAAACTTCGAAGCAGAACGCGGCATGCGCGCTTCTAAGCCTTGCCCTGGTGGAAGAGAACAAGAGCTCGATCGGGGCTTCCGGAGCGATACCGCCTTTGGTTTCGCTTCTTCTGAATGGTTCGAGCAGAGGGAAGAAGGACGCGCTGACAACGCTGTATAAGTTGTGTTCTGTCAGGCAGAACAAGGAGAGGGCAGTGAGCGCGGGTGCGGTGAAGCCGCTGGTGGAGCTGGTGGCTGAGCAGGGGAGCGGCATGGCGGAGAAGGCCATGGTTGTGCTCAACAGCTTGGCGGGGATTCAGGAAGGGAAGGACGCGATTGTGGAAGAAGGTGGGATCGCTGCTCTTGTGGAGGCCATTGAGGATGGGTCTGTGAAGGGGAAGGAGTTCGCAGTCCTGACCCTTCTTCAGCTCTGTGTTGACAGTGTCAGAAACAGAGGGTTTCTTGTTAGAGAGGGTGGGATTCCTCCTCTCGTTGCCCTTTCTCAAACTGGGAGTGTTCGGGCTAAGCACAAGGCCGAAACGCTTCTTCGATATTTGAGGGAATCAAGACAAGAGGCCTCTACTTCGAGTTCTTAG 1368 0.5746 MVSLEESRSNSSRFPLARSYQYHSSVSSKAQRHIGRSMRTIRSSFFQDDSSSCSFTEKSTCLSENLTDSVVDLHLGELASRNNKSVQSSPAEEDLLDLSQAFSDFSACSSDISGELQRLATLPSPECAQKSDTSGEVEPELEPCMGFLQRESFSTEIIESISPEDLQPTVKICIDGLQSQSLAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSSRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEQGSGMAEKAMVVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSVRNRGFLVREGGIPPLVALSQTGSVRAKHKAETLLRYLRESRQEASTSSS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01269 455 FunFam U-box domain-containing protein 4 309 450 - -
Spst6g01269 455 Gene3D - 154 310 IPR011989 -
Spst6g01269 455 FunFam U-box domain-containing protein 4 156 308 - -
Spst6g01269 455 SUPERFAMILY ARM repeat 166 444 IPR016024 -
Spst6g01269 455 Gene3D - 311 455 IPR011989 -
Spst6g01269 455 SMART arm_5 199 239 IPR000225 GO:0005515
Spst6g01269 455 SMART arm_5 281 321 IPR000225 GO:0005515
Spst6g01269 455 SMART arm_5 240 280 IPR000225 GO:0005515
Spst6g01269 455 SMART arm_5 322 362 IPR000225 GO:0005515
Spst6g01269 455 SMART arm_5 363 403 IPR000225 GO:0005515
Spst6g01269 455 SMART arm_5 405 445 IPR000225 GO:0005515
Spst6g01269 455 Pfam Armadillo/beta-catenin-like repeat 201 238 IPR000225 GO:0005515
Spst6g01269 455 Pfam Armadillo/beta-catenin-like repeat 283 321 IPR000225 GO:0005515
Spst6g01269 455 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 292 334 IPR000225 GO:0005515
Spst6g01269 455 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 333 375 IPR000225 GO:0005515
Spst6g01269 455 PANTHER U BOX DOMAIN-CONTAINING 122 444 - -
Spst6g01269 455 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 210 252 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01269 Spst-Chr6 11699724 11701547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01269 109 448 U-box Gene Family AT2G23140 45.584 5.70e-85 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01269 - - gmx:100818658 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03284 3 82731654 82733918 Spst6g01269 6 11699724 11701547 PCT