Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01260 ATGTCTGACGCTGAAGAAGGCTCCACCAATCCGCGGCGATGGAAGTTCCAGTTCTTCGTCCGCATGGTGTGGCCGGAGCGCAACTTGGTGATGACCGCTTACCCGGAAGAGACGGTAAAATCGGTCCTTGCGCAGATCGCGTGGGTGACGGGAATGCCACTGAAGGAACTGAGAGTGATATACAACGGAAAACAACTTCAATTGGAGAAGACTCTGGAAGAGTGCGGAATCGAGAACGATTGCAATCTCAACATCGTTGGTCGCTTGCGCAGCGGATTGTACCCCGCGGCGTCGCACACTATCGACTGCGTGCTCTCCCTGCTCGGCCAAGTGTGGACCTGCAACACGCAGCGCTCATGCGAGGCCTTGAACACCTTGACGGGTCTTATCACGCGCTATTTCAACCTTCCTGGTTTCGTTGAGCTTTTCGCGGCCTCTAATGCCCCCGCGATGCTTGTCGCGGTCTACAACAAGCCTTGTGGTGCGCGTACCGGGAAACTCGCCGAGTCTTGCATAACCTATTTCCTGAGTTGTGCGCGCGCGAAGAACTCGCAGAGTGTTTCCAGTGGCGCGGTGATGGAGTTTTGCAAGCAGCTTAGAAAGATTGGGCGTGGACGCGATGACCATTTGTACGTTTCGTGTAGAAACACTTTGGGGCATTTGTTGGAGACAATTGGGGTTTCCTATGGTTCTGGGAGTGTGAAAAAGAGGGTTTCGCTTCACGATGTTTTCTCCTTTGTTCCTGAGCTTGCGGATAGGTTGTTAATGGGTTTGGATAATAGTAAGCAGTGTAGAAACATCACAAGGCCTTCCCTGGGAGATGTTTTGGATTTTAAAACATTTTTGGCCCCTTTGAGGAATCAAATTATTCTGCAGCAGCAATTGTTGAGGGGTTTTGTGAGTGGGGATGGAAACTGTAGCGTGGAGAAGGATGATGACCAATTGCTTGCGGAAGAAGTCGATTATCTTCGGCTTGTGTTTCTTCGGTTGTTAAGCACAATGGATGAATGCTTTAACTGCATGGCGGAATGCATGGTGGACAAGGAACCTGGTGGGAAGGGTTTTGTTCTCTATCCATCATGGTCTATGTATCTTCGTATTTTGAAGGAGTTGTATGATACTTCTAAGGTCTTTGATGGTGCAGAGGAAATGTTTTGGACAATTTTGAGGTTACATAAGAATATGCTGTCTGCGCTTGTTGTTGGGTTTGTGAGGATAGGAGATGAGCATCGGTGGATTCTTGATAACAGGAGTGTGACCACTTTTGAGTGTAGGAGGCATTTGGCGATGGTGCTGTTCCCCATTGAAAGAGAAGACTTTGACATGTTTCATGAGATGCTTATTGACAGGTCTCAGGTACTGGCGGAGTCTTTTGAGTACATAGGAGGGGCGAAGCCTGAGTCTCTGCGTTCTGGTCTGTTTATGGAATTCAAAAATGAGGAAGCTACAGGACCGGGTGTGTTGCGGGAGTGGTTTGTTTTGGTGTGTCGTGGAATATTTGATTCACGACATGCTCTTTTTGTGGCTTGCCCGAATGACTGCAGGAGATTTTATCCGAATCCTGCATCTAAGGTACATCCTCGGCACCTTGAGTACTTTAGGTTTGCTGGTCGGGTAATTGCATTGGCTTTGTCCAAAAAGGTGCAAGTTGGTATCGTCTTTGATCGTGTATTTTTCATGCAATTGGCTGGAATTCATGTTACCTTAGAAGATATACGGGATGCAGATCCATACTTGTATAGAAGCTGCAAGCAAATATTGGAGATGGATGCCAATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAAGAATTAGGATGCAGGAAAGTAGTTGAGCTTTGTCCTGGTGGGAAAAGCCTTGTAATGAATAGTCATAACAGGGAGCATTATGTTGATCTTCTTATACAGCATTGTTTTGTCAAATCCATATCTGAGCAGGTATCAAATTTTGCCAAGGGTTTTGCTGATATTCTTTCCAGCTCAAAGGTTCAAGAGTTCTTCCAACGTTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGATAATACAATCTCTATTGAAGATTGGAAGGCACATACCAAGTACCAGGGCTATGAAGAGTCTGATTGTGAGATATCATGGTTTTGGGAGATTGTTGGGAGAATGTCAGCGCAACAAAGGAGGGTTCTGATTTTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGATTCCGTGGTTTGCCTTCCCCTCTATTCATTTGCAGGACTACGGAACCAAGCAATCGCCTGCCCTCATCTCACACATGTTTTTACCAGCTGTGTTTCCCCCAGTATTCATCTATGGCTGTCATGCATGATCGATTTGGAGTCATCACTCAAGAACACATTGCTTGTAGTTTTGGTACTAGTTAA 2415 0.4609 MSDAEEGSTNPRRWKFQFFVRMVWPERNLVMTAYPEETVKSVLAQIAWVTGMPLKELRVIYNGKQLQLEKTLEECGIENDCNLNIVGRLRSGLYPAASHTIDCVLSLLGQVWTCNTQRSCEALNTLTGLITRYFNLPGFVELFAASNAPAMLVAVYNKPCGARTGKLAESCITYFLSCARAKNSQSVSSGAVMEFCKQLRKIGRGRDDHLYVSCRNTLGHLLETIGVSYGSGSVKKRVSLHDVFSFVPELADRLLMGLDNSKQCRNITRPSLGDVLDFKTFLAPLRNQIILQQQLLRGFVSGDGNCSVEKDDDQLLAEEVDYLRLVFLRLLSTMDECFNCMAECMVDKEPGGKGFVLYPSWSMYLRILKELYDTSKVFDGAEEMFWTILRLHKNMLSALVVGFVRIGDEHRWILDNRSVTTFECRRHLAMVLFPIEREDFDMFHEMLIDRSQVLAESFEYIGGAKPESLRSGLFMEFKNEEATGPGVLREWFVLVCRGIFDSRHALFVACPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALSKKVQVGIVFDRVFFMQLAGIHVTLEDIRDADPYLYRSCKQILEMDANFIDSDALGLTFVREVEELGCRKVVELCPGGKSLVMNSHNREHYVDLLIQHCFVKSISEQVSNFAKGFADILSSSKVQEFFQRLELEDLDWMLHGSDNTISIEDWKAHTKYQGYEESDCEISWFWEIVGRMSAQQRRVLIFFWTSVKYLPVEGFRGLPSPLFICRTTEPSNRLPSSHTCFYQLCFPQYSSMAVMHDRFGVITQEHIACSFGTS 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01260 804 CDD HECTc 444 802 IPR000569 GO:0004842
Spst6g01260 804 Gene3D - 16 92 - -
Spst6g01260 804 SMART ubq_7 16 88 IPR000626 GO:0005515
Spst6g01260 804 SUPERFAMILY Ubiquitin-like 8 92 IPR029071 -
Spst6g01260 804 Gene3D Hect, E3 ligase catalytic domain 565 647 - -
Spst6g01260 804 ProSiteProfiles Ubiquitin domain profile. 16 92 IPR000626 GO:0005515
Spst6g01260 804 SUPERFAMILY Hect, E3 ligase catalytic domain 440 788 IPR035983 GO:0004842
Spst6g01260 804 SMART hect_3 463 802 IPR000569 GO:0004842
Spst6g01260 804 Pfam Ubiquitin family 19 90 IPR000626 GO:0005515
Spst6g01260 804 ProSiteProfiles HECT domain profile. 465 804 IPR000569 GO:0004842
Spst6g01260 804 Gene3D Hect, E3 ligase catalytic domains 447 679 - -
Spst6g01260 804 Gene3D Hect, E3 ligase catalytic domain 688 803 - -
Spst6g01260 804 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 27 802 - -
Spst6g01260 804 FunFam E3 ubiquitin-protein ligase UPL5 688 803 - -
Spst6g01260 804 Pfam HECT-domain (ubiquitin-transferase) 494 794 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01260 Spst-Chr6 11602072 11606998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01260 17 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.169 7.30e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01260 - - gmx:100789233 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03274 3 82649713 82657263 Spst6g01260 6 11602072 11606998 PCT