Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01235 ATGAGTCAACTCAGTGTGGTCTTGCAGGAATCGCTACAGAGGGAGCCCAGGACCATTCTCGGCTTGCTCAGGGACCAGATGGACGGTGTAGATGCTGGGACCCGCAGGAGGAGGACCTTCAAGGAACGCTTCGGGTTCATCGGAATGGGCTGTTGTGGGGCCGCATGGGGCTTCCGTTCTCACGAGTTAAGTTTCGCCAACGAAGAGCAACAACAGCAGCAGCAACCGAACCACCAGGAAACGGATCCGGGTCTGAACTGCGTGGGACCCTCTGCGGCTGGTTCGGGTATGAATCTGGCTGCGGCACTCGCGGCTGAGCGGCAAATACGGGGGCCGCAGGAGGAGGCGGGGAGGGCGCCGGGGACGCCGTGGAGGGTGTCGCTGATGAGACTGCTGGAGGAGAGCGAAGGAGGGGAGTCCGCGGCGGTGGAGAAGGAAAAGGAGGAGGAGAAGGGTGGCGTTGTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGAAGAAAGAAAGGCGCGGCGTTCATCCCATGTGGTCACACTTTTTGCAGGGTGTGTTCGAGGGAAGTGTGGCTTAATCGAGGCTCTTGTCCTCTCTGCAATCGCTCCATCCTCGAGATTCTCGATATTTTCTAA 630 0.5921 MSQLSVVLQESLQREPRTILGLLRDQMDGVDAGTRRRRTFKERFGFIGMGCCGAAWGFRSHELSFANEEQQQQQQPNHQETDPGLNCVGPSAAGSGMNLAAALAAERQIRGPQEEAGRAPGTPWRVSLMRLLEESEGGESAAVEKEKEEEKGGVVGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRSILEILDIF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01235 209 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Spst6g01235 209 SMART ring_2 161 198 IPR001841 -
Spst6g01235 209 MobiDBLite consensus disorder prediction 66 84 - -
Spst6g01235 209 MobiDBLite consensus disorder prediction 66 89 - -
Spst6g01235 209 Pfam Zinc finger, C3HC4 type (RING finger) 158 203 - -
Spst6g01235 209 SUPERFAMILY RING/U-box 160 206 - -
Spst6g01235 209 CDD RING-HC 161 198 - -
Spst6g01235 209 PANTHER OS01G0917900 PROTEIN 5 209 - -
Spst6g01235 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 209 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01235 Spst-Chr6 11378810 11379439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01235 19 209 C3H Transcription Factor Family AT4G22250 55.612 4.77e-65 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01235 - - gmx:100804292 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01235 6 11378810 11379439 Spst6g01235 6 11378810 11379439 ECH
Spst3g03255 3 82525850 82526440 Spst6g01235 6 11378810 11379439 PCT