Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01229 ATGGAGCGTTTGGCTAGGTCAGCTCGAGTGTGGCGTTGGCGTTTGCACTCCACTTTTCAAACCCTAACTTCTCGCTCCTCACCTCATTCTACACATCCCAAATTTGCGTCTTCTCGGTTTGCCTCTTCTACAGTGTTCGATGTTTCGAGTTCCAGAGTCTCGCGCGTGGATTATTCCTTGCTTCCGGTTTTCTTAGCTAGTGTTTTCGGAACTGGATTGGTGGAAGTGGCTTATGCGGATAATGATGTTGTGGATGTCCAAGAAATAGCCAAGAGGGAACGCCAGCGAATTGAGCAGTTGATTAGAAGTAGAGGAATTCGATATGGTTCTTATCCTTTCTTCTCTGTCGCCGTTAAGGGTGAAAAGGTCAGTATTAAGTTTCAAATTCCTGATGGTTGTGATATTTCACAACTTATTGCAAATCTTACTGCACATCTTGGAATGAAATCTGAAGGCCATGGAGGTGGTTCAGACATGTTATTACGAGCTTGGGACAGCACATTTGCTTGGCAACTTACCCTTACTCATCCATCAGAACAAAAGCATATTCCAGCGAATGATATGTCTTCAAAAGATATAAATGCAGATGATAGGGATCTATGTATACTCATATTTCGTTCTCTCGTTGGCTTAGATAAAGCTGAGATTGAATTCATTAAGAGAGGGGAATTGTGTCCTGAAGAGCTTGATGCTTTCATTTCTGTTTTACAATTAGCTGGTGATAAGTTGGGACAAAGAAGCACCCTGGAAAGAAAACCAAAGGAAGAGACTGAAAATGTGCCATCTGTTAATAAATCTATTTCTGATCTTGAGCGTATGGGAGTGAGAATTTATGGACTTGATGAACCTATAGTTATACCAAAAGATGGTGAGATATCATGGGACAGCATTGCTGGTTATGAACATCAAAAACGAGTAATAGAAGATACAATACTATTGGCTTTGCATAGTCCTGAAGTATATGATGATATTGCTAGAGAGACTCGCCATAAGTTTGAGTCAAACAGACCTCGAGCTGTGCTATTTGAAGGTCCACCTGGTACTGGGAAAACATCCTGTGCTCGTGTCATTGCCAATCAAGCGGGTGTGCCTTTGCTATATGTTCCACTCGAGGCAATAATGTCTGAGTTCTACGGTAAAAGTGAACGTCTTCTAGGGAAAGTGTTTTCGCTTGCAAACAATCTTCCGAATGGTGCTATTATATTTCTGGATGAGATTGATTCTTTTGCTGCTGCGCGTGACAGTGAAATGCATGAAGCTACGCGAAGAATATTGTCGGTCTTGTTGAGACAGTTTGCCGGATCTGAAATAGATGGCTTTGAGCAGGATAAGAAAGTGGTAGTCATTGCTGCCACAAATAGAAAGGAAGACCTTGATCCCGCATTAATCAGTCGGTTTGATAGTATCATCGCCTTTGGCTTACCTGATCATCGGAATCGTCAGGAAATAGCATCTAAATATGCTAAGCACCTGTCCAAAGCCGAACTGGATGAACTTGCAAGAGTTACAGAAGATATGTCTGGAAGAGATATTAGAGATGTTTGTCAGCAAGCAGAACGATCGTGGGCGTCGAAGATTATTCGAGGGCTAGTTCCTAAAGAGGGGGAAAAAGCGAAGCTTCCAGCTTTGCAAGAATATATACAATGCGCCAGGAGCCGACAAGAGGCGCTGCGTAGTGCCGCCGCAAACAGCACGAAGTTCCGAAGCTATTCCCGCCCCAAGATACTAAGCGACTGA 1737 0.4306 MERLARSARVWRWRLHSTFQTLTSRSSPHSTHPKFASSRFASSTVFDVSSSRVSRVDYSLLPVFLASVFGTGLVEVAYADNDVVDVQEIAKRERQRIEQLIRSRGIRYGSYPFFSVAVKGEKVSIKFQIPDGCDISQLIANLTAHLGMKSEGHGGGSDMLLRAWDSTFAWQLTLTHPSEQKHIPANDMSSKDINADDRDLCILIFRSLVGLDKAEIEFIKRGELCPEELDAFISVLQLAGDKLGQRSTLERKPKEETENVPSVNKSISDLERMGVRIYGLDEPIVIPKDGEISWDSIAGYEHQKRVIEDTILLALHSPEVYDDIARETRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEAIMSEFYGKSERLLGKVFSLANNLPNGAIIFLDEIDSFAAARDSEMHEATRRILSVLLRQFAGSEIDGFEQDKKVVVIAATNRKEDLDPALISRFDSIIAFGLPDHRNRQEIASKYAKHLSKAELDELARVTEDMSGRDIRDVCQQAERSWASKIIRGLVPKEGEKAKLPALQEYIQCARSRQEALRSAAANSTKFRSYSRPKILSD 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01229 578 SMART AAA_5 336 476 IPR003593 GO:0016887
Spst6g01229 578 CDD RecA-like_protease 325 472 - -
Spst6g01229 578 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 286 521 - -
Spst6g01229 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 290 522 IPR027417 -
Spst6g01229 578 Gene3D - 291 474 IPR027417 -
Spst6g01229 578 ProSitePatterns AAA-protein family signature. 446 465 IPR003960 GO:0005524|GO:0016887
Spst6g01229 578 Gene3D - 475 548 - -
Spst6g01229 578 Pfam ATPase family associated with various cellular activities (AAA) 340 473 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01229 Spst-Chr6 11323390 11329338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01229 336 518 Calmodulin-binding Proteins AT3G56690 37.368 3.64e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01229 - - gmx:100803362 922.539