Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01226 ATGGTCGAGGGATGGGATGGGGATATGGAGAAAACCTATGGTGCTGGAAATAGAGAAAAAGGGGTTGAGAGGAAGAGACATTCGGACTGTCCCACAAGCTTTACCAGCTTTATTTACTTAGGTGCAGACGCGCTTTTTTCCGTGTGGTGGGCTATGCCCAATGACGATGATGCCTTTGGTGACTTCCCATCATGCTGTAACAGTGGAACTCCTATCATGCTCGACAATAACCACAACAACAACGATGATAACAACACTGGGGTAGGATACTATTTCATGGAGAGTGACCACCACCGCAACAGTAACAACAACAATGGAAGCTCCTCTTCCTCTTCCGCTGTCAAGGCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAATTGTCAGAAGGTTGGAGCCCCGCCTGAAGTGGTGGCAAGGTTGGAAGAAGCATGTGCTTCTGCGGTGACAATAGCAGGAGATGCATCTGGATCGAGTTGCATAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAAGCCTACTGTGAGATGCTGACCAAGTACGAGCAAGAACTCTCCAAACCTTTAAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAAAATCTTACAATTTCTTCCTCCGACTTTGCGTGTAATGAGGGTGCTGATAGGAATGGATCATCTGAAGAGGATGTTGATCTGCAGAGCATGATAGATCCCCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTCTGCGCAAGTACAGTGGATACTTGGGCAGTCTGAAGCAGGAGTTCATGAAAAAGAGGAAGAAGGGAAAGCTACCTAAAGAAGCAAGACAACAGTTGTTGGAATGGTGGAGCAGACATTACAAATGGCCGTACCCATCTGAATCACAGAAGCTGGCTCTTGCAGAATCTACAGGTCTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACACTACTACATGGATACTGTTCTGGCCAATCCATTTCCCATGGACCTCTCCCATCCCATGCTCTAG 1104 0.4746 MVEGWDGDMEKTYGAGNREKGVERKRHSDCPTSFTSFIYLGADALFSVWWAMPNDDDAFGDFPSCCNSGTPIMLDNNHNNNDDNNTGVGYYFMESDHHRNSNNNNGSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVTIAGDASGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSSDFACNEGADRNGSSEEDVDLQSMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDTVLANPFPMDLSHPML 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01226 367 SMART ELK_2 249 270 IPR005539 GO:0003677
Spst6g01226 367 MobiDBLite consensus disorder prediction 1 20 - -
Spst6g01226 367 ProSiteProfiles 'Homeobox' domain profile. 269 332 IPR001356 GO:0003677
Spst6g01226 367 SMART HOX_1 271 336 IPR001356 GO:0003677
Spst6g01226 367 Pfam KNOX2 domain 166 213 IPR005541 GO:0003677|GO:0005634
Spst6g01226 367 SMART KNOX2_2 163 214 IPR005541 GO:0003677|GO:0005634
Spst6g01226 367 ProSitePatterns 'Homeobox' domain signature. 307 330 IPR017970 GO:0000981|GO:0006355
Spst6g01226 367 Pfam Homeobox KN domain 289 328 IPR008422 GO:0003677|GO:0006355
Spst6g01226 367 Gene3D - 274 336 - -
Spst6g01226 367 ProSiteProfiles ELK domain profile. 249 269 IPR005539 GO:0003677
Spst6g01226 367 Pfam KNOX1 domain 113 152 IPR005540 GO:0003677|GO:0005634
Spst6g01226 367 CDD homeodomain 281 333 IPR001356 GO:0003677
Spst6g01226 367 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 98 338 - -
Spst6g01226 367 SUPERFAMILY Homeodomain-like 271 347 IPR009057 -
Spst6g01226 367 Pfam ELK domain 249 270 IPR005539 GO:0003677
Spst6g01226 367 FunFam Homeobox protein knotted-1-like 2 274 336 - -
Spst6g01226 367 SMART KNOX1_2 112 156 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01226 Spst-Chr6 11296319 11303625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01226 114 367 Homeobox Transcription Factor Family AT1G62360 80.153 5.33e-133 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Spst6g01226 KNOX2 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01226 - - gmx:100805837 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01226 6 11296319 11303625 Spst6g01226 6 11296319 11303625 ECH
Spst3g03248 3 82470033 82474339 Spst6g01226 6 11296319 11303625 PCT