Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01219 ATGGTGGAACCCACCATTATCTCCGAATTGAAGAAACTTCTCCCTTTTCAGTATTCAACTTTTTCTCCCATCATTTCAAAGAATATAAATCTGATTACAAAATCTTCGTACTGCTTACCGGAAGGCACGACCCTCACTTACATTAGCACTCTTTTTGGAAAGCCCACATCGGAGATTCTGAAGTACAACCCAAGCGTGACAAACCCCGACGCGATTCACAGCCAAACGCGGATCAACGTGCCGTTCTCGTGTGAATGCTTAAACAGTGAGTTTTTGGGGCACACTTTCACGTACAAGATCCAACGCGGGGACACGTACAAGATAGTTGCGGCGATTCATTTCTCGAACCTCACCACGGAGGATTGGCTGAGCAAGGTGAACAGTTACATATCCTATGAGATTCCTGAGAATGTCAACATCAACGTCACCGTCAACTGCTCCTGCGGAAACCGACATGTGTCCAAGGAGTATGGACTGTTCTTGACGTACCCGCTTCGGGTGGGTGATGACTTGCAGGGGCTTGCGGCGAAATCCGGTGTGCCGGCGGAGCTGCTGACACGGTACAACCCCGCCTCCAATTTCAATGCTGGAAATGGACTCGTCTTCGTGCCGGCCAAAGTTGCTAAATCCGCCCAATTTCCTCTTCATGTATGGCTACCCGATGCTATGGAGGGACCTACCCCCATTTCCGCCCTTATACATGCTGCTACTATGGTAGCCGCGGGAATTTTTCTTGTGGCTCGACTTCTTCCTCTTTTCAACCTGTACCTGTTTCTTCCAAACTTTTGCAGATCAGGAATATCTAGCGGAGCCATTGCTAGCATAGCTGTTGGAGGAGCTGTTGGGGTCCTAATTTTGGCACTTCTTCTATATGTTGGACTACACAGAAGAAGGAAAGTGGCTGAGGCTGAGGTATCCCATCTCCCAGTTCCAGGAGCATCTGAAGATCAGTGTAGTCCACTGTGTCATGGTATTGGTTCTGGAAGCATCTTGGACAAGGCATCGGAATCTTCAGTTGTTGCTTCTCCAAGGATGACTGGGATTACAGTGGACAAGTCAGTGGAGTTCTCATATGAGGAACTAGACAAGGCCACTGATGGCTTTAGTGTGGCTAATATAATTGGTCAAGGTGGCTTTGGATCTGTTTACTATGCTGAACTTCGGAATGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAATGAATTCCTTGCAGAACTAAAGGTTCTAACGCATGTCCATCACTTGAACTTGGTGCGGTTAATAGGATATTGTGTTGAGGGCTCCTTATTTTTGGTTTATGAGTATATTGAGAACGGCAATTTAAGACAACATTTGCGAGGCTCAGGGAGGGATCCGTTAACATGGGGAGCTAGAGTTCAAATTGCCCTTGATGCAGCAAGAGGATTGGAATACATCCATGAGCATACAGTTCCTGTCTACATCCATAGAGATATTAAATCAGCAAACATTTTGATAGACAAAAACTTTCGTGCAAAGGTTGCAGATTTTGGTCTCACAAAATTGACGGAGTATGGTAGTTCTTCATTACAAACGCGTCTTGTGGGAACCTTTGGCTATATGCCTCCAGAATATGCACAGTATGGTGATGTTTCCTCCAAAGTAGATGTATATGCTTTTGGAGTTGTTCTCTATGAACTCATATCAGGCAAAGAAGCTATCGTCAAGACAAACGATCCCGAGAACGAATCAAAAGGACTAGTCGCCTTGTTTGAAGAAGTTCTTGGTCTGTCAGATCCAAAAGAAGATCTTCGTCAACTTGTTGACCCTAGACTTAGTGACAAATACCCTCTTGACTCAATATTTAAGGTGTCTCAGCTTGCGAAAGCATGCAAAATCCCAAGATGTTCCAGAGATTTTGGAAGTTCAAGAAGGAGAACGGTTGAAGAAGACGATACTATGAAATCAAAGGCTAAAAGGGAAGAAGACGTTTTGAGTGATAAAATGTGGACAACTGATCGTCCTCTTAGGAAAGGACTAGAGCCCGGAAAGTTTCTTACTGCATTGAAGAAGAAAAGAAAATTTGAAGACGATATCTTGGCTGACAATTTGGACGATGATGAAATTGTTGTTCCTTCAAACCCAAATTCCCGAAGCAAAGCTAGAAAAATTGATAATCGTAAGGTATCCCAATCTGTCAATAGCAGACATTTCAAAAGAGTGTCCCTTTTGCCAAAACAATTGCAATTGCAGTGTTTGTTTGCGTTCAACAGGAATGATTGTGTTTCAATATGTGAATGGGGATTTGATTATATGCATGGTGGTGATCCATTACCAGTATCTTGTAATTTAGAGCCTTCAAGAGGTCATGCTAAGATATTTACCAAATGGAATGCCAATAGTGATGGAAGTATTAGATGTGCACCAAAAGAAATGGGAGGCTGTGGTGGCCCTGTGATGGAGCTGAAGCGCATTCTTTTAGATGGGTGGATATCAGACTTGGAAGACAAAGCTCGTAACCTGCTAAAAGCCTTTTGCAAAACTGAACAAACAACTCTTCAGAAAGAAGCAATATCAACTTGCAATTCTAAGATAAGAGCAGCTTTTAGAAATGACACAAGTGATAATAACTTATACTGTCCATTTTCAAGTGACCTCATAAATAAAGGGCTGCATCTCTTCCAAAAACACTGGACTCAGGGCGAACCAATCATTGTTCGTGATGTTCTTAAGCAGGGGACGGGTCTTAGTTGGGAGCCAATGGTCACATTGCGAGCCCTGAGTGAAAATGTGGTTCCAGGAAGCAGCTCAAATATGACAGAATTGAAGGCCATTGATTGCCTTTCTTCTTGTGAGGTAGAAATCAGTGCTGGTGCATTCTTCAAGGGTTATACCCAAGGAAGAACATACAAAAATCTGTGGCCAGAGATGCTAAAGTTAAAAGACTGGCCTCCCTCTGACAAGTTTGATGATCTTTTGCCTCGCCATTGTGACGAGTTTATCCACTGCTTGCCATTTCAAGAGTATTGTGATCCTCGAGCTGGGATCCTCAACCTTGCTGTAAAGTTGCCATCCCATGTTCTAAAGCCAGACCTTGGTCCAAAGACATATATTGCTTATGGAATTACAGAGGAACTTGGCAGGGGAGATTCAGTTACAAAACTTCACTGTGACATGTCTGATGCTATGAGCATTCCTATGGTTAATAATTTTACATTCCTTGTTACTTTGCCTAGTTTAAAGGTTGTTTTTCTATGGGTCTGTAAAGATTGTAAAGCTCGCCTTGACGAAGAACTACGCAAAGACAACAGAGAAGAAAATAAGTGTGCTATCTCTAAAGAATCAGGTGGTGCTCTTTGGGACATCTTTCGGAGAGAGGATACTGAAAAGTTAAAAGCATATTTAAGGAAGCACTTCAAAGAATTTAGGCATACTTATTGCTCTCGGGTTGAAGAGGTTGTTCATCCAATTCATGACCAATGCTTTTACTTGACTTTGGAACAGAAGAAGAATCTGAAGAAGGAGTTTGAACCTTGGACTTTTCAGCAACAACTTGGGGACGCAGTATTTATTCCTGCTGGATGTGCTCACCAACTCAGGAATCTTAAGGTGAAACAACTCTTGACACATTGA 3600 0.4283 MVEPTIISELKKLLPFQYSTFSPIISKNINLITKSSYCLPEGTTLTYISTLFGKPTSEILKYNPSVTNPDAIHSQTRINVPFSCECLNSEFLGHTFTYKIQRGDTYKIVAAIHFSNLTTEDWLSKVNSYISYEIPENVNINVTVNCSCGNRHVSKEYGLFLTYPLRVGDDLQGLAAKSGVPAELLTRYNPASNFNAGNGLVFVPAKVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFNLYLFLPNFCRSGISSGAIASIAVGGAVGVLILALLLYVGLHRRRKVAEAEVSHLPVPGASEDQCSPLCHGIGSGSILDKASESSVVASPRMTGITVDKSVEFSYEELDKATDGFSVANIIGQGGFGSVYYAELRNEKAAIKKMDMQASNEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLRQHLRGSGRDPLTWGARVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGDVSSKVDVYAFGVVLYELISGKEAIVKTNDPENESKGLVALFEEVLGLSDPKEDLRQLVDPRLSDKYPLDSIFKVSQLAKACKIPRCSRDFGSSRRRTVEEDDTMKSKAKREEDVLSDKMWTTDRPLRKGLEPGKFLTALKKKRKFEDDILADNLDDDEIVVPSNPNSRSKARKIDNRKVSQSVNSRHFKRVSLLPKQLQLQCLFAFNRNDCVSICEWGFDYMHGGDPLPVSCNLEPSRGHAKIFTKWNANSDGSIRCAPKEMGGCGGPVMELKRILLDGWISDLEDKARNLLKAFCKTEQTTLQKEAISTCNSKIRAAFRNDTSDNNLYCPFSSDLINKGLHLFQKHWTQGEPIIVRDVLKQGTGLSWEPMVTLRALSENVVPGSSSNMTELKAIDCLSSCEVEISAGAFFKGYTQGRTYKNLWPEMLKLKDWPPSDKFDDLLPRHCDEFIHCLPFQEYCDPRAGILNLAVKLPSHVLKPDLGPKTYIAYGITEELGRGDSVTKLHCDMSDAMSIPMVNNFTFLVTLPSLKVVFLWVCKDCKARLDEELRKDNREENKCAISKESGGALWDIFRREDTEKLKAYLRKHFKEFRHTYCSRVEEVVHPIHDQCFYLTLEQKKNLKKEFEPWTFQQQLGDAVFIPAGCAHQLRNLKVKQLLTH 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01219 1199 FunFam LysM receptor kinase 2 347 438 - -
Spst6g01219 1199 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524
Spst6g01219 1199 SMART cupin_9 982 1198 IPR003347 -
Spst6g01219 1199 Pfam JmjC domain, hydroxylase 1106 1192 IPR003347 -
Spst6g01219 1199 ProSiteProfiles JmjC domain profile. 1001 1199 IPR003347 -
Spst6g01219 1199 Pfam Protein tyrosine and serine/threonine kinase 371 566 IPR001245 GO:0004672|GO:0006468
Spst6g01219 1199 FunFam PTI1-like tyrosine-protein kinase 3 439 627 - -
Spst6g01219 1199 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Spst6g01219 1199 Pfam Proton-conducting membrane transporter 190 282 IPR001750 -
Spst6g01219 1199 SMART serkin_6 368 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01219 1199 Gene3D Cupin 864 1195 - -
Spst6g01219 1199 ProSiteProfiles Protein kinase domain profile. 368 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01219 1199 Gene3D Phosphorylase Kinase; domain 1 349 438 - -
Spst6g01219 1199 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 33 620 IPR044812 GO:0019199|GO:0045087
Spst6g01219 1199 SUPERFAMILY Clavaminate synthase-like 881 1191 - -
Spst6g01219 1199 CDD cupin_RmlC-like 1144 1198 - -
Spst6g01219 1199 PRINTS NADH-ubiquinone oxidoreductase chain 5 signature 205 226 - -
Spst6g01219 1199 PRINTS NADH-ubiquinone oxidoreductase chain 5 signature 227 253 - -
Spst6g01219 1199 Gene3D Transferase(Phosphotransferase) domain 1 439 627 - -
Spst6g01219 1199 MobiDBLite consensus disorder prediction 631 650 - -
Spst6g01219 1199 SUPERFAMILY Protein kinase-like (PK-like) 348 570 IPR011009 -
Spst6g01219 1199 ProSiteProfiles LysM domain profile. 35 80 IPR018392 -
Spst6g01219 1199 CDD TM_EGFR-like 265 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01219 Spst-Chr6 11234182 11248991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01219 35 620 Receptor kinase-like Gene Family AT3G21630 49.832 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Spst6g01219 PK_Tyr_Ser-Thr 3.3e-45 CL0016
TR Jumonji Spst6g01219 PK_Tyr_Ser-Thr 3.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01219 - K13429 gmx:100802308 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01219 6 11234182 11248991 Spst6g01219 6 11234182 11248991 ECH
Spst3g03244 3 82410099 82414483 Spst6g01219 6 11234182 11248991 PCT