Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01208 ATGGACAAAAGATGGGGACTCACCCTTGATTCCTCTTCCTCTCAATCCCTCTCATTATTGCCTTCCAAACAATCTCCCTCTTCTTTCTCCAAACTCACCAACGACACCATGTTCCCTCTCCTCGGATTCCCCGTTAATCTTAGCCGCCCCACCGCCAAGGAAGACGAACACGACCGCAAAGTCGTCGGTGAAGTCGACTTCTTCTCTGATAGAATCACCAAACCAACACCCCCACCCTCCCACGACCAACACGTTAAACCCAACATCGTCAAGAAGGAAATTGTTGAAACCCCTCTCCACGTTAATACTGGTTTACAACTCCTTACTGCTAACACCGGGAGTGACCAATCTACCGTCGATGATGGGGTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACTGAGCTTGCACAGATGCAAGTGGAGCTTCAACGCATGAACGCAGAGAACAAGAAGCTGAAAGAGATGCTGAGCCATGTGAGCGGTAACTACACGGCCTTGCAGATGCATCTTATGACATTAATGCAACAGAACCAGCACACCGAGAGCACAGAAAATGAGGTTGTCCAGGGAAAGACCGAGGATAAAAACCATGGTATTGGTGGAGGAAAGGTTCCAAGGCAGTTCCTTGATATAGTTCCCAGTGGCACGGCCGAAGTAGATGATCAAGTGTCCGATTCTTCTTCCGATGAAAGAACACGATCGAGCACACCTCAGAACAATAACATTGAAGTTGGAGCAAGAGATGATGCGAGAAATATTAATGGCAAAAGAGAGTTGGGTAGGGAAGAGAGTCCAGACTCAGAATCACAAGGTTGGGCTTCCAATAAGCTTCAGAAAAATAACCCTTCCAATGGTATGGATCAGTCCACTACCGAAGCCACAATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCAGAAGCTCCCATGATCAGCGATGGGTGCCAATGGCGAAAGTATGGACAAAAAATGGCCAAGGGAAACCCATGTCCTCGAGCATATTATAGATGCACTATGGCAGTGGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCGGAGGATAGAACAATTTTGGTGACAACATATGAAGGTACACATAACCATCCGCTGCCACCTGCTGCTATGGCCATGGCATCAACCACTACAGCTGCTGCTAGCATGTTGCTGTCAGGGTCAATGTCCAGTGCAGACGGAATAATGAACCCAAATTTGCTAGCCAGAGCAATTCTTCCTTGCAATTCTAGCATGGCAACACTTTCAGCTTCAGCACCATTTCCAACCGTGACTTTGGACCTCACACACAACCCAAACCCATTACAATTTCAAAGACAAGCTGCCCCATTCCCAGTACCCTTCCTCCAAGGGCAGCCTCAGAACTTTGGGTCCGGAGCCACCCCAATTTCACAAGCACAATCACTTTATAATCAATCAAAATTCTCTGGTCTTCAGCTATCTCAGGAAGTAGGATCTTCCCACTTGGCCCCACAAGCTCCTAGACCACCCTTACAGCCAAGCCAGCAACCCTCGCAGGCTGATACAGTCAGTGCCGCCGCCGCCGCAATCACCGCCGATCCAAACTTCACCGCCGTCCTTGCCGCTGCCATCTCCTCCATCATAGGCGGTGCTCATAATGCAAACAACAACACCAATAACAACAACAGCACAAGCAGGACTACCATTAGCAGCTTTTCAGGAAACTGA 1710 0.4877 MDKRWGLTLDSSSSQSLSLLPSKQSPSSFSKLTNDTMFPLLGFPVNLSRPTAKEDEHDRKVVGEVDFFSDRITKPTPPPSHDQHVKPNIVKKEIVETPLHVNTGLQLLTANTGSDQSTVDDGVSSDAEDKRAKTTELAQMQVELQRMNAENKKLKEMLSHVSGNYTALQMHLMTLMQQNQHTESTENEVVQGKTEDKNHGIGGGKVPRQFLDIVPSGTAEVDDQVSDSSSDERTRSSTPQNNNIEVGARDDARNINGKRELGREESPDSESQGWASNKLQKNNPSNGMDQSTTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCNSSMATLSASAPFPTVTLDLTHNPNPLQFQRQAAPFPVPFLQGQPQNFGSGATPISQAQSLYNQSKFSGLQLSQEVGSSHLAPQAPRPPLQPSQQPSQADTVSAAAAAITADPNFTAVLAAAISSIIGGAHNANNNTNNNNSTSRTTISSFSGN 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01208 569 Gene3D WRKY domain 298 375 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g01208 569 ProSiteProfiles WRKY domain profile. 308 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01208 569 SMART WRKY_cls 313 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01208 569 MobiDBLite consensus disorder prediction 112 132 - -
Spst6g01208 569 MobiDBLite consensus disorder prediction 7 31 - -
Spst6g01208 569 MobiDBLite consensus disorder prediction 179 307 - -
Spst6g01208 569 MobiDBLite consensus disorder prediction 546 569 - -
Spst6g01208 569 MobiDBLite consensus disorder prediction 492 516 - -
Spst6g01208 569 Coils Coil 130 164 - -
Spst6g01208 569 MobiDBLite consensus disorder prediction 269 298 - -
Spst6g01208 569 Pfam WRKY DNA -binding domain 315 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g01208 569 SUPERFAMILY WRKY DNA-binding domain 306 374 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g01208 569 MobiDBLite consensus disorder prediction 188 202 - -
Spst6g01208 569 MobiDBLite consensus disorder prediction 1 31 - -
Spst6g01208 569 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 109 558 IPR044810 GO:0003700
Spst6g01208 569 MobiDBLite consensus disorder prediction 251 267 - -
Spst6g01208 569 FunFam probable WRKY transcription factor 31 298 375 - -
Spst6g01208 569 MobiDBLite consensus disorder prediction 231 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01208 Spst-Chr6 11063700 11066049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01208 1 556 WRKY Transcription Factor Family AT1G62300 52.492 1.51e-157 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst6g01208 WRKY 6.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01208 - - pvu:PHAVU_006G147800g 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01208 6 11063700 11066049 Spst6g01208 6 11063700 11066049 ECH
Spst5g00720 5 6247622 6250206 Spst6g01208 6 11063700 11066049 ECH
Spst11g01120 11 35541549 35544408 Spst6g01208 6 11063700 11066049 ECH