Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01196 ATGAAGCCTGAAGCTGCTGAGAGTGATCAGGGCTCTCTCAAACGCTCCCCACCTTCAACCATGTCTTCTTCTTCCTCTTCTCTCATCACCACCCTTGTTGATCATAATAATAAACCTTCACACCCTCCTGAGTTAAAACCTCCTCGCCGTCGTTTTGCTTCTCATCATCTTCCTGAGATAAGCCTAAAAACTCCTATGGTTAGGCCTTATGTTCGATCAAAAATGCCTAGGCTTCGTTGGACACCAGATCTCCATCGTTGCTTCGTGCATGCAGTTCAGAGACTTGGAGGAGAAGACAGGGCCACACCAAAGTTGGTCTTACAGCTCATGAATGTAAAGGGGCTTACCATATCTCATGTCAAAAGCCACCTTCAGATGTACAGGAGCATGAGGCACGAGCAGATGAGTGAAGATGCAAAGAAGAATGATGTGGCTCCGGATTTCCCAGCTTCCACGTTCTCAACTCTTGGCCCAGAGTACGGCCAACAGAATCCTCACCAAAGAAGCTGCACGGAAGAGCTCGTTTCCACCCATGCTCACTGGAATGATGATGAGGAAGAGTATTACAGTGGAAAGCGAGGGGGTAAATCGATTATAGTTTGTAACGGCAATGAACAGAAGATGCACTCCTACATCATCTTCGAGGGTCTTATCCCAGGCCAGACTGTCCAAGAGAATAAAAATGGTCCTGAAAAGGTGTCACTAGGGGGTGCCACTGGTTACGAAAGCGACCATGAAAGATTCCAAGACAGAAGTACTGGCATAGGAAGAAGAGGAGGAGGAGGAGGAGAGAGAGTGGGTGAAGGCACAGTGTCGTTCTCAATGAGCTCGAGGGCTAATTCACATTCATTCTTCAATCGCAGCCACACTGGTCCAGATGCCAATGATGTCTCTCTTGAGCTCACGCTCTCTTAG 915 0.4798 MKPEAAESDQGSLKRSPPSTMSSSSSSLITTLVDHNNKPSHPPELKPPRRRFASHHLPEISLKTPMVRPYVRSKMPRLRWTPDLHRCFVHAVQRLGGEDRATPKLVLQLMNVKGLTISHVKSHLQMYRSMRHEQMSEDAKKNDVAPDFPASTFSTLGPEYGQQNPHQRSCTEELVSTHAHWNDDEEEYYSGKRGGKSIIVCNGNEQKMHSYIIFEGLIPGQTVQENKNGPEKVSLGGATGYESDHERFQDRSTGIGRRGGGGGERVGEGTVSFSMSSRANSHSFFNRSHTGPDANDVSLELTLS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01196 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 45 163 IPR046955 GO:0003700
Spst6g01196 304 Gene3D - 75 133 - -
Spst6g01196 304 MobiDBLite consensus disorder prediction 239 304 - -
Spst6g01196 304 NCBIfam myb-like DNA-binding domain, SHAQKYF class 76 129 IPR006447 GO:0003677
Spst6g01196 304 MobiDBLite consensus disorder prediction 1 50 - -
Spst6g01196 304 MobiDBLite consensus disorder prediction 12 37 - -
Spst6g01196 304 MobiDBLite consensus disorder prediction 270 304 - -
Spst6g01196 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 132 IPR017930 -
Spst6g01196 304 FunFam Myb family transcription factor 74 132 - -
Spst6g01196 304 Pfam Myb-like DNA-binding domain 78 128 IPR001005 -
Spst6g01196 304 SUPERFAMILY Homeodomain-like 74 130 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01196 Spst-Chr6 10966638 10969071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01196 67 133 G2-like Transcription Factor Family AT2G42660 77.612 6.97e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst6g01196 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01196 - - pvu:PHAVU_006G149000g 477.633