Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01170 ATGATGCAGCCAGGACCCGGCATGGCTCCTCCCACTATGGGGCAGCAACCACCGCAACAGTACCAGCAACAGCCGCCGCCTCAGCAACAACCCTACGTCATGATGCCGCCGCAGCCCCAGGCGCCGCCACCGATGTGGGCCCCCTCCTCCCAGCCTTCGCCGCAGCAGCAGCCCGCCAGCGCTGACGAGGTCCGGACCCTTTGGATCGGCGATTTGCAGTACTGGATGGACGAGAACTATCTCTACACCTGCTTTGCACCTACTGGCGAGGTTACATCTGTTAAAGTGATTCGAAACAAGCAAACTAGTCAATCGGAAGGTTATGGGTTTATTGAGTTTAATAATCGTGCTGCAGCTGAGAGAATTCTTCAAACATATAATGGGGCTATAATGCCGAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAAGTTTTAGTGCCGGTGAGAGGCGTCATGATGATTCTCCAGATTACACCATATTTGTTGGTGACTTGGCTGCAGATGTGACCGATTACCTGCTTCAAGAGACCTTTAGGGCTCGTTTCAACTCAGTGAAGGGCGCAAAAGTTGTTATTGATAGGCTAACTGGTCGGACCAAGGGGTATGGCTTTGTTAGATTTGCAGATGAGAGTGAACAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGAGAATTGGGCCAGCCAGTAATAAAACCCCTGCTGCTCAGCCTAAAGCTTCTTCATATCAGAATTCTCAATCTCAAGGCACCCAGAACGAAAACGATCCTAATAATACAACTATTTTTGTGGGCAATTTGGATGCTAATGTCACTGATGATCATCTGAGGCAAGTTTTTAGTCAGTATGGAGAATTAGTTCATGTGAAGATTCCTGCTGGCAAGCGATGTGGTTTTGTCCAATTTGCTGACAGGAGCTGTGCTGAAGAGGCACTTCGGATGTTAAATGGAACACTATTGGGTGGACAAAACGTTCGTCTTTCATGGGGACGCAGTCCTTCTAACAAACAGGCTCAGGGTGATCCAAACCAGTGGAATGGTGGCGGTGGATATTATGGGTATGCACAAGGGTATGAAAACTATGGTTATGCTCCTTCTGGACAGGATCCCAACGTGTATGGCAGTTATCCGGGGTATCCTGGTTACCAACCACCACAGCAACAGCAGCAAATAGGATATAGTTGA 1203 0.4904 MMQPGPGMAPPTMGQQPPQQYQQQPPPQQQPYVMMPPQPQAPPPMWAPSSQPSPQQQPASADEVRTLWIGDLQYWMDENYLYTCFAPTGEVTSVKVIRNKQTSQSEGYGFIEFNNRAAAERILQTYNGAIMPNGGQSFRLNWASFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRARFNSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKTPAAQPKASSYQNSQSQGTQNENDPNNTTIFVGNLDANVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQAQGDPNQWNGGGGYYGYAQGYENYGYAPSGQDPNVYGSYPGYPGYQPPQQQQQIGYS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01170 400 FunFam Polyadenylate-binding protein RBP45 10 149 - -
Spst6g01170 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 338 IPR000504 GO:0003723
Spst6g01170 400 SUPERFAMILY RNA-binding domain, RBD 253 363 IPR035979 GO:0003676
Spst6g01170 400 SUPERFAMILY RNA-binding domain, RBD 64 238 IPR035979 GO:0003676
Spst6g01170 400 FunFam Polyadenylate-binding protein RBP45C 242 371 - -
Spst6g01170 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 56 342 - -
Spst6g01170 400 FunFam Polyadenylate-binding protein RBP45C 150 241 - -
Spst6g01170 400 SMART rrm1_1 159 233 IPR000504 GO:0003723
Spst6g01170 400 SMART rrm1_1 267 334 IPR000504 GO:0003723
Spst6g01170 400 SMART rrm1_1 66 141 IPR000504 GO:0003723
Spst6g01170 400 MobiDBLite consensus disorder prediction 378 400 - -
Spst6g01170 400 CDD RRM1_SECp43_like 66 146 - -
Spst6g01170 400 CDD RRM2_SECp43_like 157 236 - -
Spst6g01170 400 Gene3D - 241 372 IPR012677 -
Spst6g01170 400 Gene3D - 157 233 IPR012677 -
Spst6g01170 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 237 IPR000504 GO:0003723
Spst6g01170 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 145 IPR000504 GO:0003723
Spst6g01170 400 Gene3D - 9 153 IPR012677 -
Spst6g01170 400 MobiDBLite consensus disorder prediction 228 267 - -
Spst6g01170 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 223 IPR000504 GO:0003723
Spst6g01170 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 331 IPR000504 GO:0003723
Spst6g01170 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 132 IPR000504 GO:0003723
Spst6g01170 400 MobiDBLite consensus disorder prediction 1 62 - -
Spst6g01170 400 MobiDBLite consensus disorder prediction 240 267 - -
Spst6g01170 400 MobiDBLite consensus disorder prediction 20 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01170 Spst-Chr6 10733384 10737045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01170 64 345 Eukaryotic Initiation Factors Gene Family AT2G23350 27.178 1.74e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01170 - - gmx:100801562 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01170 6 10733384 10737045 Spst6g01170 6 10733384 10737045 ECH
Spst3g03202 3 82066357 82070177 Spst6g01170 6 10733384 10737045 PCT