Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01159 ATGGATTCGTCACAATACAGAATACTGACTCCCCCATCATTTGTTTGGCCTACAATGACTGGGACACCAGAGGAGTCAAGAAACCTAACCATGGAAAACGTCACCTCTTCTTCTCTGTCTCACATTCCATCAATTTCAGCTCCATCTTCTTCTGAACCTTTCGACGAGTCTTCAGAAGACTCCTGCAGTATATGCCTGGAGCACTTCACCATTCATGAACCATCCACTGTTACCTGTTGCAAACATGAATATCATCTGCATTGCATTATTGAATGGTCACAAAGAAGCCAAGAGTGCCCAATATGTTGGCAATCCCTTGCTTTGAAAGACTCTGCCAGCCAAGAGCTTCTAGCTGCAGTGGAAGCTGAAAAACGCATGAGATCAAGAAACACCACTAATATTCGAGCCCCCCCTGAACAGCTTAATGATGCCTATGATGACGATTCATTCTCAGATGACTTTGATTCTGATGACCAGATTATGAGGCGCCTAGTTGCTGCTGCAAATAGAGCCCGTTTTGTTCAGAGACAGGAAAGGAATAGATCACCTGATGCTGATGCTGGTCCATCGGATGTTTTTGATGTTAACTCTTCCATACATGTATCTGAGGTGCAAACAACACTTACAACTTCACCATCTTGGGGGAGTTTGCCAACCTCTGATGTAAGATATACTGTTAATAGTCAACCTGCGGCATTAAATACTACACCCGAGAGTGCAAGCAGACCGAACACTTCTGATATGTTTTCCTTCCCAGAGTCCTTCAAATCCAAATTTTCTGCTGCTTCAGCCAGGTAA 798 0.4398 MDSSQYRILTPPSFVWPTMTGTPEESRNLTMENVTSSSLSHIPSISAPSSSEPFDESSEDSCSICLEHFTIHEPSTVTCCKHEYHLHCIIEWSQRSQECPICWQSLALKDSASQELLAAVEAEKRMRSRNTTNIRAPPEQLNDAYDDDSFSDDFDSDDQIMRRLVAAANRARFVQRQERNRSPDADAGPSDVFDVNSSIHVSEVQTTLTTSPSWGSLPTSDVRYTVNSQPAALNTTPESASRPNTSDMFSFPESFKSKFSAASAR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01159 265 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 24 110 - -
Spst6g01159 265 MobiDBLite consensus disorder prediction 227 251 - -
Spst6g01159 265 SUPERFAMILY RING/U-box 52 109 - -
Spst6g01159 265 Pfam Ring finger domain 60 102 IPR001841 -
Spst6g01159 265 ProSiteProfiles Zinc finger RING-type profile. 62 102 IPR001841 -
Spst6g01159 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 108 IPR013083 -
Spst6g01159 265 SMART ring_2 62 102 IPR001841 -
Spst6g01159 265 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01159 Spst-Chr6 10653438 10657408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01159 55 111 C3H Transcription Factor Family AT5G38895 40.351 2.98e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01159 K19043 - gmx:100805449 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01159 6 10653438 10657408 Spst6g01159 6 10653438 10657408 ECH