Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01150 ATGGACGAGAACAAACATGGTGAAGCAGCGGAAGGAGATGCCAACAACACTCCGCCTCCTCCCAATCCTCCAACACAGACTGTTGGTCGTGTTGTCCCTTCATCATCCCTGCGGATACCTGAAGAACCATTGGAGCAACGACTGAACAAGTTCTGGGATAAACAGTACCAAGAAATTGAGGAGACCACTAATTTCAGGAATCACAGCTTGCCTCTGGCTAGGATCAAGAGGATAATGAAGTCTGACGAGGAGGTGAAACTGGTAGCAGCTGAGGCTCCTGTGGTGTTCGCCAAGGCATGTGAAATGTTCATTACGGAGCTCACAACGAGAGCATGGGTTAATGCTGAGGAGAACAGAAGGAGAACACTTACTAAGGCTGACATTGTATCTGCTATGTCAACTACTGATATGTATGATTTTCTTATTGATATTGTCCCCAGAGAAGACACAAGGGAGCATCAAGTGCATGCAGGCATACCAGGAACAAGCATGTTTCCAACTCCAGCTGAGAATGTTCCTTACTATCCTATGCCACCTAATCAACGTGTTGCAGACCCTGCAGGCCCACAATATGGTGTTCCGGTGATGCTCATGGGAAATCCAAGTCTTGATGAAAATCATCATGTCCCGCAAAATCATCCTTCTCCAACTCCAATGTTGCCCAATCCTGGCGGACATAACAACCATTCTCCTAATTCAGATGATTGA 708 0.4661 MDENKHGEAAEGDANNTPPPPNPPTQTVGRVVPSSSLRIPEEPLEQRLNKFWDKQYQEIEETTNFRNHSLPLARIKRIMKSDEEVKLVAAEAPVVFAKACEMFITELTTRAWVNAEENRRRTLTKADIVSAMSTTDMYDFLIDIVPREDTREHQVHAGIPGTSMFPTPAENVPYYPMPPNQRVADPAGPQYGVPVMLMGNPSLDENHHVPQNHPSPTPMLPNPGGHNNHSPNSDD 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01150 235 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 42 163 - -
Spst6g01150 235 FunFam Nuclear transcription factor Y subunit gamma 37 147 - -
Spst6g01150 235 Gene3D Histone, subunit A 37 147 IPR009072 GO:0046982
Spst6g01150 235 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 69 132 IPR003958 -
Spst6g01150 235 SUPERFAMILY Histone-fold 51 141 IPR009072 GO:0046982
Spst6g01150 235 MobiDBLite consensus disorder prediction 199 235 - -
Spst6g01150 235 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01150 Spst-Chr6 10596328 10597035 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01150 51 204 CCAAT-HAP5 Transcription Factor Family AT5G63470 51.613 6.91e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Spst6g01150 CBFD_NFYB_HMF 4.1e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01150 K08066 - gmx:100807580 197.593