Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01149 ATGTTGGGGATCTTCAGTAGTTCCGTGGTGTCGCCGCCCGAGGAGCTGGTGGCCGCCGGCAGCAGAACGCCGTCGCCCAAGACGACTGCGGGGAAGCTGCTGAAGCGGTTCGTGGAGAGCAAGGCATCGGCGGTGTCGCTGCAGGTGGGGGAACACGTGCAGTTGGCTTACACGCACCACAGCGAGTCACCGTGGCATCCCAGATCATTTGCTGTTAAGGATGAAATATTCTGCTTGTTTGAGGGGGCTCTCGACAATTTGGGCAGTCTGAGACAACAGTATGGACTGGCCAAGTCAGCCACTGAAGTGATTTTGGTGATTGAAGCTTACAAAGCTTTGCGTGATCGAGCACCCTACCCTGCCAATCGTGTTGTATGCCACCTCAGTGGGAGTTTTGCTTTCATAGTTTTTGACAAATCCACTTCTACCCTCTTTGTGGCTTCTGATCAAGCTGGTAAAGTTCCTCTCTATTGGGGAATCACAGCTGATGGATACGTAGCTTTTGCTGATGATGCAGATTTGCTTAAAGGTTCTTGTGGCAAGTCGCTTGCTTCTTTCCCTCAAGGATGTTTCTACTCTACTGCAGTTGGAGGATTGAGATGCTATGAGAATCCAAAGAATAAGATTACTGCAGTACCTGCTGAGGAAGAGGAAATCTGGGGTGCAACTTTCAAGGAGGTTAACCTCACAGTAGGTGGTATAAAGGGAATTGTAAGGTACAAGGTCTGTGGCCTTGGTGGAGGGGTCAGCAGTTATTGCAGCCACAGAGTAGAAGATCCATCAAAAGATAGAAGTGCGAACGGTGGAAAAGTTTATTATGGTCTAGTTTGTTCCTTAGATAGGGTTTATTCTGTTTCTCGTGTACAGTTGCGCTTTCTAATTTCAATTACAACAGCTAGTATGGATCAAAACCAAAATGGACAACCAGGAAAAGGGATTGTTGGTTCAGCATCAGCACAAGAAGCACGTGGCAAGAAGCAATATGAATCCTACCCCATGATACCACCCTCGACCAATCCTCCTATTCAGATGGTTGGTCCTTCTGCTCCTTCATCCTATCCAGGAGATTATGCTCTCCAATGCATGGACCCACACCAGCAACAGGAGGTGCAGTTGCAGGAAAAACTCAAGAGCTTTTGGGCAAAACAGCAGCAGGAGATTGAGGAGAACACTGATTCGAAGACTCCTAGCGTGCCTCTGTCAAGGATTAAGAAGATCATGAAGAGTGATCCAGATGTGAGGTTGGTTTCAGCTGAGTCTACTGCGGTGTTTGCCAAGGCCTGTGAACTGTTCATTATGGAGCTCACACTGAAGGCTTGGGCTAACGCTGAGGACAACCATAGGAGGACACTTAAGAAGTCTGACATTGCAGCTGCAATCTCAAAGACTGATGTGTTTGATTTTCTTGAAGACATTGTCCCCACTAAGGATGGCACCGACAAAACGGTGAATCGATTCCTTGCAGCCACTGCTCCAACTCCAGCTCCAGCAGAGGCTGTTCCGTACTCTTGTGTGCCACCTCCTCAGCATGTTGCAAGCCCTGCACCACCATTTGCTGCTCCACCAACTCTTCATCAACTTCCTCATGGGCCGCAGACCTATCCTCCAATTCCAGATCCAACAGGTCCCATCCCTAATGAGGAAAATCCTTCTCCTAATTTAGATGATTGA 1671 0.4841 MLGIFSSSVVSPPEELVAAGSRTPSPKTTAGKLLKRFVESKASAVSLQVGEHVQLAYTHHSESPWHPRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSATEVILVIEAYKALRDRAPYPANRVVCHLSGSFAFIVFDKSTSTLFVASDQAGKVPLYWGITADGYVAFADDADLLKGSCGKSLASFPQGCFYSTAVGGLRCYENPKNKITAVPAEEEEIWGATFKEVNLTVGGIKGIVRYKVCGLGGGVSSYCSHRVEDPSKDRSANGGKVYYGLVCSLDRVYSVSRVQLRFLISITTASMDQNQNGQPGKGIVGSASAQEARGKKQYESYPMIPPSTNPPIQMVGPSAPSSYPGDYALQCMDPHQQQEVQLQEKLKSFWAKQQQEIEENTDSKTPSVPLSRIKKIMKSDPDVRLVSAESTAVFAKACELFIMELTLKAWANAEDNHRRTLKKSDIAAAISKTDVFDFLEDIVPTKDGTDKTVNRFLAATAPTPAPAEAVPYSCVPPPQHVASPAPPFAAPPTLHQLPHGPQTYPPIPDPTGPIPNEENPSPNLDD 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01149 556 MobiDBLite consensus disorder prediction 513 547 - -
Spst6g01149 556 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 52 204 IPR029055 -
Spst6g01149 556 Gene3D Histone, subunit A 360 475 IPR009072 GO:0046982
Spst6g01149 556 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 397 460 IPR003958 -
Spst6g01149 556 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 1 197 IPR017932 -
Spst6g01149 556 SMART DUF3700_2 2 226 IPR024286 -
Spst6g01149 556 MobiDBLite consensus disorder prediction 513 556 - -
Spst6g01149 556 Pfam Aluminium induced protein 2 225 IPR024286 -
Spst6g01149 556 SUPERFAMILY Histone-fold 366 469 IPR009072 GO:0046982
Spst6g01149 556 FunFam Nuclear transcription factor Y subunit gamma 363 475 - -
Spst6g01149 556 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 34 203 IPR029055 -
Spst6g01149 556 CDD Wali7 2 225 - -
Spst6g01149 556 PANTHER ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIFS 1 225 IPR044828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01149 Spst-Chr6 10574418 10587205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01149 379 538 CCAAT-HAP5 Transcription Factor Family AT1G08970 48.750 1.08e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Spst6g01149 DUF3700 6.1e-94 CL0052
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01149 - - gmx:100789239 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01149 6 10574418 10587205 Spst6g01149 6 10574418 10587205 ECH