Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01142 ATGTCTCACATAGCTGTCGAGAGGAACAGAAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGATCTTTGACCCCATGTTTCTATATCAAAAGGGGAGATCAAGCATCTATAATAGGGGGTGTCATAGAATTCATCAAGGAGTTACACCAAGTTCTTCAAGCTTTGGAGTCCCAGAAAAGAAGAAAAAGTTTAAGCCCTAGCCCTGGTCCGAGTCCACGAACACTGCAGCCAACGTTTCATCAACTTGATAGCTCCTCCATAATAGGGACCAATTCTTTCAAGGAACTAGGAGCAAGCTGCAACTCTTCAGTTGCGGATGTTGAAGTGAAAATCTCGGGTTCAAATGTGATCCTGAAAGTCATTTCCCACAGAATTCCGGGTCAAGTTGCAAGGATCATAACTGTTTTGGAAAGTCTTTCCTTTGAAGTTCTTCATCTGAACATCAGTAGCATGGAGGAGACTGTCCTTTACCAGTTTGTGGTCAAGATAGAACTGGGATGTCAACTAAGTCTGGAGGAACTAGCAATGGAAGTGCAGCAAAGCTTCTGCTCAGAGGCCATAACCATGCTGTGA 576 0.4306 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPRTLQPTFHQLDSSSIIGTNSFKELGASCNSSVADVEVKISGSNVILKVISHRIPGQVARIITVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSEAITML 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01142 191 SMART finulus 4 55 IPR011598 GO:0046983
Spst6g01142 191 FunFam Transcription factor MUTE 1 66 - -
Spst6g01142 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Spst6g01142 191 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Spst6g01142 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
Spst6g01142 191 PANTHER TRANSCRIPTION FACTOR FAMA 1 183 IPR044283 GO:0003700|GO:0010052
Spst6g01142 191 Gene3D - 1 64 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01142 Spst-Chr6 10458410 10459988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01142 1 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 65.829 1.79e-86 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst6g01142 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01142 - - gmx:100810771 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01142 6 10458410 10459988 Spst6g01142 6 10458410 10459988 ECH