Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01140 ATGGGTATCTCGTGGAGTGGCAGAAGAAGAAACAATTACATCCAAAACCCACCACCTCCACTCCCACCTCGCCCTTACTATTACCCTCCCCAATCCCACCACCCTCCCCCTCCGCCGCCACCGCAGGGCTACTTCCTCCCTTCCACAACCACTTACACCCCGCACTGCAACAACTACGCCGCTCCTTCTCCCTTGCCGCCACCGCCGCAGACCCATTCCATCTCCTTCTATTACGCCAACCAGAGTGTCTATCCCAACTACGCCAATTCCGCTCCCAATAATAGCCTTCACTACCAACCTTTCTACCACCCTCAGCCTAGCGCGTGGGCTGCCGCCACTCGCTCCTCTGCCTCCACTCCTCCGCCCTATGTTGATCACCAGGCGGCGAAGAAGATAAGAAACTATGTTAACGTCCACAAAGACACCCTACGCCTCGAGGTTGACCAGGAAAACCCCGATCATCATCTCATTTCCTTCGTTTTCGACGCTGTCTACGATGGCAGCGTTACTGTCTTCTACTTTGCCAAAGAAGAAGAAAAATGTAGGTTTGTTCCATTATTTCCTGGTGCGTTTCAGCCAGTCAGAATACCCTTTCAGAAAGGAGTTGGCCAGACATTTTCTCAGCCTTCAGGAACAGGAATTGACCTAGGATTCTTTGAGTTGGATGATCTTTCAAAACCCTCACCAGGAGAAGATGTCTTTCCTCTTGTAATATGTGCCGAAACAAGTTTGAAATCATCCTCAACAGATGAAATTCCGGGTGATTCCATGCTAGATCCATCCCCTCACATGCAAATAACTCAAGGTGTCTTAGAGAAAAGTAATGGTGCTGGTACTTTTCTGATAAAAGTAGTAAGGCAGATTTTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAGCTCATCTACAGCTGATTTTGATGACAATGATCCCGGAAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACGGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCAAAAGCTCTGCGACTTCAATCCAATAAATGCCCAATATGCCGTCAGTCTATTGAGGAACTTATTGAGATCAAAGTAAACAATGACAATCAGTGA 1131 0.4748 MGISWSGRRRNNYIQNPPPPLPPRPYYYPPQSHHPPPPPPPQGYFLPSTTTYTPHCNNYAAPSPLPPPPQTHSISFYYANQSVYPNYANSAPNNSLHYQPFYHPQPSAWAAATRSSASTPPPYVDHQAAKKIRNYVNVHKDTLRLEVDQENPDHHLISFVFDAVYDGSVTVFYFAKEEEKCRFVPLFPGAFQPVRIPFQKGVGQTFSQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETSLKSSSTDEIPGDSMLDPSPHMQITQGVLEKSNGAGTFLIKVVRQILWIDGVRYELRELYGIGSSSTADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELIEIKVNNDNQ 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01140 376 SMART ring_2 321 359 IPR001841 -
Spst6g01140 376 ProSiteProfiles Zinc finger RING-type profile. 321 360 IPR001841 -
Spst6g01140 376 SUPERFAMILY RING/U-box 315 366 - -
Spst6g01140 376 FunFam probable E3 ubiquitin-protein ligase LOG2 305 370 - -
Spst6g01140 376 MobiDBLite consensus disorder prediction 1 43 - -
Spst6g01140 376 CDD mRING-HC-C3HC5_MGRN1-like 319 360 IPR045195 -
Spst6g01140 376 MobiDBLite consensus disorder prediction 15 43 - -
Spst6g01140 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 370 IPR013083 -
Spst6g01140 376 PANTHER MAHOGUNIN 74 372 IPR045194 GO:0061630
Spst6g01140 376 Pfam Zinc finger, C3HC4 type (RING finger) 319 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01140 Spst-Chr6 10411973 10415886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01140 89 376 C3H Transcription Factor Family AT3G06140 56.623 2.56e-109 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01140 - - vra:106775674 612.068