Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01139 ATGGAGTGGCAGAAGAAGAAACAACTACATCCAAAACCCCCACCTCCACTCCCACCTCCCCCTTACTATTACCCTCCCCAATCCCACCACCCTCCCCCTCCGCCGCCACCGCAGGGCTACTTCCTCCCTTCCACAACCACTTACACCCCGCACTGCAACAACTACGCCGCTCCTCCCCCTTTGCCACCACCGCCACCGCCGCAGACCCATTCCATCTCCTTCTATTACGCCAACCAGAGTGCCTATCCCAACTACGCCAATTCCGCTCCCAATAGCCTTCACTACCAACCTTTCTACCACCCTCAGTCTAGCGCCTGGGCTGCCGCCACTCGCTCCTCTGCCTCCACTCCTCCCCCCTATGTCGATCACCAGGCGGCGAAGAAGATAAGAAACAATGTTAACGTTCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAACACCCCGATCATCATCTTATTTCCTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTGTGTTCTACTTTGCCAAAGAAGAAGAAAAATGTAGGTTTGTTCCATTATTTCCTGATGCATTTCAGCCAGTCAGAATACCCTTTCAGAAAGGAGTTGGCCAGACATTTTCTCAGCCTTCAGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGGAGAAGATGTCTTTCCTCTTGTAATATGTGCTGAAACCAGTTTGAAAACACCCTCAGCAGATGAAACTCCGGGTGATTCCATGCTAGATGCATCCCCTCACATGCAAATAACTCAAGGTGTCTTAGAGAAAAGTAATGGTGCTGGTCCTTTTCTGATAAAAGTAGTAAGGCAGATTTTGTGGATTGACGGTGTTCGATATGAGTTGAGAGAGTTATATGGAATAGGAAGTTCATCTGCAGCTGATTTTGATGACAATGATCCTGGAAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACGGCTGTATTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCAAAAGCTCTGCGACTTCAATCCAATAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTTATAGAGATCAAAGTAAACAATGACAATCAATGA 1122 0.4795 MEWQKKKQLHPKPPPPLPPPPYYYPPQSHHPPPPPPPQGYFLPSTTTYTPHCNNYAAPPPLPPPPPPQTHSISFYYANQSAYPNYANSAPNSLHYQPFYHPQSSAWAAATRSSASTPPPYVDHQAAKKIRNNVNVHKDTLRLEVDQEHPDHHLISFVFDAVYDGSITVFYFAKEEEKCRFVPLFPDAFQPVRIPFQKGVGQTFSQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETSLKTPSADETPGDSMLDASPHMQITQGVLEKSNGAGPFLIKVVRQILWIDGVRYELRELYGIGSSSAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELIEIKVNNDNQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01139 373 PANTHER MAHOGUNIN 78 369 IPR045194 GO:0061630
Spst6g01139 373 SUPERFAMILY RING/U-box 312 363 - -
Spst6g01139 373 ProSiteProfiles Zinc finger RING-type profile. 318 357 IPR001841 -
Spst6g01139 373 SMART ring_2 318 356 IPR001841 -
Spst6g01139 373 MobiDBLite consensus disorder prediction 1 45 - -
Spst6g01139 373 Pfam Zinc finger, C3HC4 type (RING finger) 316 362 - -
Spst6g01139 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 367 IPR013083 -
Spst6g01139 373 FunFam probable E3 ubiquitin-protein ligase LOG2 302 367 - -
Spst6g01139 373 CDD mRING-HC-C3HC5_MGRN1-like 316 357 IPR045195 -
Spst6g01139 373 MobiDBLite consensus disorder prediction 10 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01139 Spst-Chr6 10404979 10408965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01139 120 373 C3H Transcription Factor Family AT3G06140 62.745 1.44e-109 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01139 - - vra:106775674 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01139 6 10404979 10408965 Spst6g01139 6 10404979 10408965 ECH