Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01130 ATGAAGATCGCAATATCAGCCTGTGCCTGCAAGCAAGAGCTGCCCCTAGTAAGTTTCGAAAAGGGACTAACGATGGAGTCGTTGTTTCATCATCGGAGTAAGGACAAGGTGGTAGTGATAATGGGTGCCACGGGTACCGGGAAGACGAAGTTGGCTATAGACGTGGCAAAACACTTCCAACCAGCGGAGATAGTGAACTCCGACAAAATGCAAGTGTACAAGGGCCTCGACATCACCACGAACAAGGTCACCGAAGAAGAGTGTGCCGGGGTCCCACACCACCTGCTTGGCACTGTTGACCCTAATATAAATTTCAGTGCTAACGACTTCTGTCGCCACGCCACTTCCGCGATCGATTCCATTGTGGAAAGGGATGGCTTACCCATCATTGCTGGAGGCTCCAATTCTTACTTGGAGGCGCTGGTGAATCACCACGCGGAGTTTAGGTTAAGGTACGAGTGCTGTTTCCTCTGGGTTGACGTGTCCCTCCCAGTCCTCCATTCCTCTCTCCAGGCACGTGTGGACCGCATGATCGACGCCGGTCAAGTCAACGAGGTGCGCGAGTTCTTCGACCCTAGCGCCGATTACACCAGAGGGATCCGAAGGGCCATAGGGGTGCCCGAATTCGACGACTTCCTACGCGCGGAAGCTTCTGGAACCGAGGACGAGATTACCAGAAAAAGGCTTCTGGAGGCTGCCATTGCCAGGATCAAGATCAACAACTGCACGCTCGCCAACCGCCAGATTCAGAAGATTCACCGCCTCCACGGGTTGTGGAAACAGAGCATGCACCGCCTCGACGCCACCGAGGTTTTCCTCGGGTCCCGCGACGCCTGGCACGACCACGTGCTCGCCAAGACCTTGCTCATCCTCCACAAGTTCCTTTACGGGGAAAAGAAAGCCCACGTCCCCGCCGGAATCGTTTCCCCAAAAGACGTTATTGCGGCTGTTTCTGCGCCGGCGGTAGCAATGGCAGCAACCCATTAG 987 0.5512 MKIAISACACKQELPLVSFEKGLTMESLFHHRSKDKVVVIMGATGTGKTKLAIDVAKHFQPAEIVNSDKMQVYKGLDITTNKVTEEECAGVPHHLLGTVDPNINFSANDFCRHATSAIDSIVERDGLPIIAGGSNSYLEALVNHHAEFRLRYECCFLWVDVSLPVLHSSLQARVDRMIDAGQVNEVREFFDPSADYTRGIRRAIGVPEFDDFLRAEASGTEDEITRKRLLEAAIARIKINNCTLANRQIQKIHRLHGLWKQSMHRLDATEVFLGSRDAWHDHVLAKTLLILHKFLYGEKKAHVPAGIVSPKDVIAAVSAPAVAMAATH 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01130 328 Gene3D - 34 295 IPR027417 -
Spst6g01130 328 FunFam Adenylate isopentenyltransferase 5, chloroplastic 163 263 - -
Spst6g01130 328 Pfam IPP transferase 71 145 - -
Spst6g01130 328 Pfam IPP transferase 149 250 - -
Spst6g01130 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 225 IPR027417 -
Spst6g01130 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 34 294 IPR039657 -
Spst6g01130 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01130 Spst-Chr6 10269436 10270422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01130 151 301 C2H2 Transcription Factor Family AT2G27760 33.333 2.83e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01130 K10760 - gmx:100812928 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01130 6 10269436 10270422 Spst6g01130 6 10269436 10270422 ECH
Spst3g03164 3 81638735 81639721 Spst6g01130 6 10269436 10270422 PCT