Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01120 ATGCTGCCATCTGATCTCCTAGTTCAAGGGGCTTTTGCTACGGTGGTATTATGGGACTTGATAATGGTGAGGGTCAGTGTCTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAGAGGGGGAAGCGCCAGGTCATGATTAGGCCATCTTCAAAAGTTATTATAAAATTCCTCTTGGTGATGCAAAAGCATGGATACATTGGAGAGTTTGAGTACGTTGATGATCACAGAGCTGGAAAAATTGTCGTTGAATTGAATGGTAGACTGAACAAATGTGGGGTTATTAGTCCCCGTTTTGATGTGGGTGTCAAAGAGATTGAAGGTTGGACTGCTAGGTTGCTCCCCTCAAGACAGTTTGGGTATATTGTGTTGACTACCTCTGCTGGCATCATGGATCACGAAGAAGCTAGGAGAAAGAATGTTGGTGGGAAAGTTCTGGGTTTCTTTTACTAG 456 0.4364 MLPSDLLVQGAFATVVLWDLIMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01120 151 ProSitePatterns Ribosomal protein S8 signature. 121 138 IPR000630 GO:0003735|GO:0005840|GO:0006412
Spst6g01120 151 Gene3D - 22 90 - -
Spst6g01120 151 Gene3D - 91 151 - -
Spst6g01120 151 Hamap 30S ribosomal protein S8 [rpsH]. 23 151 IPR000630 GO:0003735|GO:0005840|GO:0006412
Spst6g01120 151 SUPERFAMILY Ribosomal protein S8 25 151 IPR035987 GO:0003735|GO:0005840|GO:0006412
Spst6g01120 151 FunFam 40S ribosomal protein S15a 22 90 - -
Spst6g01120 151 FunFam 40S ribosomal protein S15a 91 151 - -
Spst6g01120 151 Pfam Ribosomal protein S8 28 151 IPR000630 GO:0003735|GO:0005840|GO:0006412
Spst6g01120 151 PANTHER 40S RIBOSOMAL PROTEIN S15A 22 150 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01120 Spst-Chr6 10175973 10177291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01120 22 151 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 97.692 1.70e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01120 K02957 - thj:104809034 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03149 3 81497398 81498275 Spst6g01120 6 10175973 10177291 PCT