Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst6g01116 | ATGGCTTCCGTTGCTATAAGAAACCTAAATTCTAAGCGTCTTCTTTTCTCTTTGCATTTCACAAATGCTTTACATTCATTCTCTTGTGCCACCATTCCCCAAAGCTACAATGCATCTCCATTGGATTTTGTTTCTTTACGGAGATCCATGGCCACCTTCACTCGAACAAAGCCCCATCTTAACGTGGGCACAATAGGGCATGTTGATCATGGGAAAACTACACTAACTGCTGCAATTACCAAGGTACTATCTGAAGAAGGTAAAGCCAAGGCCATTGCCTTTGAGGAAATAGACAAGGCTCCAGAGGAGAAGAAGAGAGGAATTACTATTGCTACTGCTCATGTAGAGTATGAGACAGCGAAGAGGCACTATGCCCATGTTGATTGCCCAGGACATGCAGACTATGTTAAGAACATGATAACTGGGGCTGCACAAATGGATGGTGGAATTCTTGTGGTTTCTGCTCCAGATGGGCCAATGCCTCAAACGAAGGAACATATTCTGCTTGCTCGGCAGGTTGGTGTGCCATCATTGGTCTGCTTTCTGAATAAGGTTGATGTTGTTGATGATCCAGAGTTGCTTGAACTTGTGGAAATGGAGCTTCGTGAACTACTTAGTTTCTACAAATTTCCTGGGGATGACATTCCAATTGTGCGAGGTTCTGCCCTTTCTGCTTTACAGGGGACAAATGAAGAACTTGGAAAGAAGGCTATCTTAAAACTAATGGACGCTGTGGATGAATACATTGTTGATCCTGTGCGCCAACTTGACAAGCCTTTCTTAATGCCAATAGAAGATGTTTTCTCAATTCAAGGGCGTGGAACTGTTGTGACTGGTCGTGTTGAACAAGGCACCATTAAAGTAGGTGAGGAGGTTGAAGTATTGGGACTAACACAGAGTGGACCTTTGAAGACTACCGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATCGAGGGGAAGCTGGTGATAATGTGGGACTTCTTCTACGTGGTCTGAAGCGCGATGATGTACAGCGAGGAATGGTTGTGACCAAGCCCGGTGCTTTGAAAACGTATAAGAAATTTGAAGCAGAGATTTATGTGCTCTCCAAGGATGAAGGTGGCCGTCATACAGCTTTTTTTTCTAACTATAAACCTCAGTTTTACTTGAGGACTGCAGATATTACTGGAAAGGTGGAATTACCTGAAAGTGTTAAGATGGTTATGCCTGGTGATAATGTGGCTGCAACTTTTGAGCTGATGTCACCTGTTCCTCTTGAAATAGGACAAAGATTTGCTTTGAGAGAGGGAGGGAGAACAGTTGGCGCAGGAGTTGTCTCCAAAGTAATTTCCTAG | 1338 | 0.4357 | MASVAIRNLNSKRLLFSLHFTNALHSFSCATIPQSYNASPLDFVSLRRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLSEEGKAKAIAFEEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDVVDDPELLELVEMELRELLSFYKFPGDDIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYIVDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKVGEEVEVLGLTQSGPLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRDDVQRGMVVTKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYKPQFYLRTADITGKVELPESVKMVMPGDNVAATFELMSPVPLEIGQRFALREGGRTVGAGVVSKVIS | 445 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst6g01116 | 445 | Pfam | Elongation factor Tu C-terminal domain | 350 | 443 | IPR004160 | - | |
Spst6g01116 | 445 | NCBIfam | small GTP-binding protein domain | 61 | 196 | IPR005225 | GO:0005525 | |
Spst6g01116 | 445 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 98 | 113 | IPR031157 | - | |
Spst6g01116 | 445 | Gene3D | Translation factors | 389 | 444 | - | - | |
Spst6g01116 | 445 | PRINTS | GTP-binding elongation factor signature | 141 | 152 | IPR000795 | GO:0003924|GO:0005525 | |
Spst6g01116 | 445 | PRINTS | GTP-binding elongation factor signature | 105 | 113 | IPR000795 | GO:0003924|GO:0005525 | |
Spst6g01116 | 445 | PRINTS | GTP-binding elongation factor signature | 125 | 135 | IPR000795 | GO:0003924|GO:0005525 | |
Spst6g01116 | 445 | PRINTS | GTP-binding elongation factor signature | 178 | 187 | IPR000795 | GO:0003924|GO:0005525 | |
Spst6g01116 | 445 | PRINTS | GTP-binding elongation factor signature | 61 | 74 | IPR000795 | GO:0003924|GO:0005525 | |
Spst6g01116 | 445 | Pfam | Elongation factor Tu GTP binding domain | 57 | 249 | IPR000795 | GO:0003924|GO:0005525 | |
Spst6g01116 | 445 | Pfam | Elongation factor Tu domain 2 | 274 | 345 | IPR004161 | GO:0005525 | |
Spst6g01116 | 445 | Gene3D | - | 49 | 252 | IPR027417 | - | |
Spst6g01116 | 445 | Hamap | Elongation factor Tu [tuf]. | 48 | 445 | IPR004541 | GO:0003746|GO:0005525|GO:0006414 | |
Spst6g01116 | 445 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 57 | 253 | IPR000795 | GO:0003924|GO:0005525 | |
Spst6g01116 | 445 | Gene3D | Translation factors | 255 | 385 | - | - | |
Spst6g01116 | 445 | FunFam | Elongation factor Tu | 255 | 385 | - | - | |
Spst6g01116 | 445 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 354 | 445 | IPR009001 | - | |
Spst6g01116 | 445 | FunFam | Elongation factor Tu | 48 | 252 | - | - | |
Spst6g01116 | 445 | PANTHER | ELONGATION FACTOR TU-RELATED | 51 | 444 | - | - | |
Spst6g01116 | 445 | SUPERFAMILY | Translation proteins | 254 | 350 | IPR009000 | - | |
Spst6g01116 | 445 | CDD | EF_Tu | 58 | 252 | IPR041709 | - | |
Spst6g01116 | 445 | CDD | EFTU_II | 260 | 348 | IPR033720 | - | |
Spst6g01116 | 445 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 55 | 275 | IPR027417 | - | |
Spst6g01116 | 445 | CDD | EFTU_III | 351 | 440 | - | - | |
Spst6g01116 | 445 | NCBIfam | elongation factor Tu | 49 | 444 | IPR004541 | GO:0003746|GO:0005525|GO:0006414 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst6g01116 | Spst-Chr6 | 10151785 | 10155493 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst6g01116 | 55 | 443 | Eukaryotic Initiation Factors Gene Family | AT5G60390 | 30.345 | 2.71e-44 | 159 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst6g01116 | K02358 | - | gmx:102667962 | 795.808 |