Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01107 ATGATCGATTTCTCCACAATACTTATGGGTTGGGTTGAGAGTACGTTGTCTCTGTTGTTAATGGTTATTTTTGTTATTTTTGTGGCTCTTATTACAATGCACCTGGGCACCATTGGAGTTTTCATATTGTGGGGTGGTGTATTGCTCTTCTGGCATGTGTTAAATGTTGAAAGAGGTAACTCAGAGGATGACATTGAGGCTCATGCTACAGGGAATCCCATTTTGGTTGCAAGAGAAAGGAATCAAAGACAACCATCTTCTCAAAATGTAGACCTTCCTTCTTTGAACCCCAAAATACATATTGCTATGCTAAGCATCAGACATTTGCCTCCTGTTCTATGCTTTCAAGAGGATGAAACCACTCAGTCTCAAAATGTTTGTTCTGTTTGCATGGAGGAGTTCAAGAATGGAGAGTTAATTCAACCTTTTCCAGTTTGTCAGCATCAATTTCATTTCTATTGCATCAATTCCTGGCTACTTGATGGAAACACTACTTGCCCACTTTGTCGCGGGGATCTCAGCATTGTTACTGAAACTGAAAGATGA 546 0.3993 MIDFSTILMGWVESTLSLLLMVIFVIFVALITMHLGTIGVFILWGGVLLFWHVLNVERGNSEDDIEAHATGNPILVARERNQRQPSSQNVDLPSLNPKIHIAMLSIRHLPPVLCFQEDETTQSQNVCSVCMEEFKNGELIQPFPVCQHQFHFYCINSWLLDGNTTCPLCRGDLSIVTETER 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01107 181 SUPERFAMILY RING/U-box 117 176 - -
Spst6g01107 181 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 174 IPR044675 -
Spst6g01107 181 ProSiteProfiles Zinc finger RING-type profile. 127 170 IPR001841 -
Spst6g01107 181 SMART ring_2 127 169 IPR001841 -
Spst6g01107 181 Pfam Ring finger domain 126 170 IPR001841 -
Spst6g01107 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 175 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01107 Spst-Chr6 10072073 10072618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01107 83 170 C3H Transcription Factor Family AT4G10160 37.755 4.65e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01107 - K19039 aprc:113865236 112.849