Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01106 ATGTGTGAGGGTGTTGTGTATGCTGCATCTCTTGCAATTTTCTGTTTGTTGGTGATATTATTGTGGGTATTGTGTTGGATAGCATGGCTACTGTATGCACGCCACGCGCAAACCGCACCAACCACACCCATCCAAGACATTGAGTCTGCTCAGCAACCCGGTTCAGGTCCAGCAAGAGCGAACGTTGCTTTGCAGATTGCCGCAACGAGAGGTCGAAGAACACTTTGGCGTGAAACGCTGATGTATTTCGCCCCCAAAGCAGAGATTTCGAGGCTTGCCGTCAGAGCCTTGCCTCCTGCTGCACCCTTCCAGGAGGATGAAGCCAGTACTCAATCTGAGTGCCCTATTTGCCTCGAAGATTTTATCAATCAAGAGTTAGTCCAACCTTTTGGAGTTTGCCTTCATCTATTTCATGCCCCTTGCATAAACTCTTGGTTACTCCAGGCTAATACTACTTGTCCAGTTTGTCGCAAGGAATTGACAATTAATCCCTAG 495 0.4788 MCEGVVYAASLAIFCLLVILLWVLCWIAWLLYARHAQTAPTTPIQDIESAQQPGSGPARANVALQIAATRGRRTLWRETLMYFAPKAEISRLAVRALPPAAPFQEDEASTQSECPICLEDFINQELVQPFGVCLHLFHAPCINSWLLQANTTCPVCRKELTINP 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01106 164 SMART ring_2 114 156 IPR001841 -
Spst6g01106 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 163 IPR013083 -
Spst6g01106 164 ProSiteProfiles Zinc finger RING-type profile. 114 157 IPR001841 -
Spst6g01106 164 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 160 IPR044675 -
Spst6g01106 164 Pfam Ring finger domain 113 157 IPR001841 -
Spst6g01106 164 SUPERFAMILY RING/U-box 98 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01106 Spst-Chr6 10061670 10062164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01106 5 160 C3H Transcription Factor Family AT1G53010 30.723 1.76e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01106 - - aprc:113865236 99.3673