Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01087 ATGAGCGATGAACGAGAACCAACAGCTTCCTCGAGCAATGGCGTCCGCAAGTTTGAAAGAAAACAAATAGCTGAAAAGGAGAGATCTACTGTTAAAGGCAACCGTCCACGACCTGGGTTTTCTGATTCATTTTCAAGTATTGACTTGGAAACTTTAGACATTGAAGAGGGAGGCCTACCTGAACACTCTCCCAGGAGTCAAGGGTCTGAAACCCCAGGTTCAAAGGCCAGCACTTCTGATTCGGAGAGTCAGGGGGCTTTAATAGGCAATTCACCTAATAATAATAACCAATGGCGTGGTTTCTTTAAGTTACTGAAGAAAGGATCCCAAATGCCTTTTCAAACTTTTCATCCACTTAAAAATGTTCCTAAACTGACAAGAAGAAAAAGCAAGAGAATCAGGGAGGACCTGATTCCATCTCTGAATTCTCCAGCTCTCCAGTCATCTTTTGACACTGACTTTAGCTGCTTCAAATCTTCCTGGAAAAACTTCACTCTCGCGGAGATCTTGACTGCAACAAATGACTTTAGCCAAGAGAATTTGATTGGGGAGGGAGGCTATGCCGAGGTTTATTTGGGGAAATTGGACGATGGAAACTTTGTTGCCATTAAACGGTTGACAAGAGGGAACCAAGAGGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATTATTGTACACGTGGATCACCCCAATATAGCTAGATTGATTGGATATGGTGTTGAAGGAGGAATGTTTCTCGTTCTTCAATTGTCTCCACATGGTAGCTTGTCATCAATACTTTATGGACCTAGAGAGAAACTGAATTGGAACCTCAGATATAAGATTATTTTGGGGACTGCTGAGGGCCTCCGTTATCTGCATGAGGGGTGTCAAAGAAGGATCATTCACAAAGATATTAAGGCTTCTAATATTCTGCTCTCAGAGGATTTTGAGCCCCAGATATCTGATTTTGGGCTTGCAAAGTGGTTACCTGACCAATGGACTCACCATACTGTCTCCAAAGTGGAAGGCACATTCGGCTATCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAGACAGATGTCTATGCTTATGGTGTGCTATTATTGGAGCTCATTACTGGTCGACAAGCTTTGGATAGCTCACAGAAAAGTCTGGTGATGTGGGCAAAACCTTTGCTATCTGCGAATAAGATCAAAGAGCTTGTGGATCCAGTTTTGGTTGGTGCTTACGATGAAGAGCAGATGAAACTTGTAAGCTTAACAGCTTCTCTATGTGTAGACCAATCTTCGATTCAGCGACCAGATATGAGCCAGGTGTTAGACATTCTAAGAGGGGAAGAAGATAGCGTAAGAATCATAAAAGAACGGGCGAAGTCAAAACTTCAGAGGACATACTCTGAAGAACTCTTGGATGCAGAAGAGTACAACTCAACGAAGTTTTTGAATGAGAGGGATCGACATATGGAGACTATTCTAGGCTCAGTTACAGACGAATGA 1491 0.4259 MSDEREPTASSSNGVRKFERKQIAEKERSTVKGNRPRPGFSDSFSSIDLETLDIEEGGLPEHSPRSQGSETPGSKASTSDSESQGALIGNSPNNNNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDTDFSCFKSSWKNFTLAEILTATNDFSQENLIGEGGYAEVYLGKLDDGNFVAIKRLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWNLRYKIILGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSANKIKELVDPVLVGAYDEEQMKLVSLTASLCVDQSSIQRPDMSQVLDILRGEEDSVRIIKERAKSKLQRTYSEELLDAEEYNSTKFLNERDRHMETILGSVTDE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01087 496 SMART serkin_6 176 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01087 496 PANTHER OS08G0249100 PROTEIN 34 475 IPR046958 -
Spst6g01087 496 MobiDBLite consensus disorder prediction 64 94 - -
Spst6g01087 496 Pfam Protein tyrosine and serine/threonine kinase 179 439 IPR001245 GO:0004672|GO:0006468
Spst6g01087 496 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 253 455 - -
Spst6g01087 496 ProSitePatterns Protein kinases ATP-binding region signature. 182 204 IPR017441 GO:0005524
Spst6g01087 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Spst6g01087 496 Gene3D Transferase(Phosphotransferase) domain 1 253 466 - -
Spst6g01087 496 MobiDBLite consensus disorder prediction 1 94 - -
Spst6g01087 496 ProSiteProfiles Protein kinase domain profile. 176 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g01087 496 SUPERFAMILY Protein kinase-like (PK-like) 156 441 IPR011009 -
Spst6g01087 496 MobiDBLite consensus disorder prediction 18 33 - -
Spst6g01087 496 MobiDBLite consensus disorder prediction 1 17 - -
Spst6g01087 496 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 146 250 - -
Spst6g01087 496 Gene3D Phosphorylase Kinase; domain 1 140 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01087 Spst-Chr6 9944478 9947509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01087 147 445 Receptor kinase-like Gene Family AT1G53420 39.739 2.03e-68 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Spst6g01087 PK_Tyr_Ser-Thr 1.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01087 - - gmx:102670300 853.588