Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01080 ATGGAACCCCAGTCTCTCCCTCCCATGGACGACGCCGAAGACCCTTCCTCCATTTGGGACTTCTCCTACCTCCTTGACTTCAACGTCGACGAGGACCACACCAACAACTCTCTCCCTCTTCCTCCTCCATTAAACGATGCTACCGAGATCCCTAACGACCGGGTTCGAAAGCGTGACCCCCGACTCGCCTGTTCCAACTTTCTCGCGGGTCGGGTCCCATGCGCCTGCCCCGAACTCGACGCCAAGCTCGAGGACGAGGGTTTGCCTGGCAAGAAACGCGCCCGCACCGCGCGAGCATCCGCATCCGCTCGATGCCAGGTCCCTGGCTGTGAGGTCGATATCTCCGAACTCAAAGGCTACCACCGCCGACACAGAGTCTGCCTCCGCTGCGCCAATGCCGCCACCGTTGTTCTCCACGGCGAGCCCAAGAGATACTGCCAGCAGTGCGGAAAGTGCGATTCCCTTTCTTCACTCTCTTTGCCGTCGATTGAGTCAATTGCCTCGCTCCTTTGTTAG 516 0.595 MEPQSLPPMDDAEDPSSIWDFSYLLDFNVDEDHTNNSLPLPPPLNDATEIPNDRVRKRDPRLACSNFLAGRVPCACPELDAKLEDEGLPGKKRARTARASASARCQVPGCEVDISELKGYHRRHRVCLRCANAATVVLHGEPKRYCQQCGKCDSLSSLSLPSIESIASLLC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01080 171 Gene3D - 100 158 IPR036893 GO:0003677|GO:0005634
Spst6g01080 171 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 151 IPR044817 GO:0003677
Spst6g01080 171 Pfam SBP domain 105 157 IPR004333 GO:0003677
Spst6g01080 171 MobiDBLite consensus disorder prediction 32 53 - -
Spst6g01080 171 ProSiteProfiles Zinc finger SBP-type profile. 102 171 IPR004333 GO:0003677
Spst6g01080 171 SUPERFAMILY SBT domain 103 157 IPR036893 GO:0003677|GO:0005634
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01080 1 151 SBP-box Gene Family AT5G18830 53.488 3.98e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst6g01080 SBP 4.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01080 - - gmx:100776034 244.202