Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01078 ATGAATGGCATGGATGTCTCATCTTGGATGCTCATTGAGGACAGTGCAGATTCTGAAGGAGACACTAGCTTCTCTAACATTGGCCACAATGAGGATGATGTTGAATCTTGTACCTGTGACACTGCGGGTAAATGTGGTCTATTTGAGGACGGTGAAAGTCATGAAGATGAAAAGGGGTGTGGTGAATTTTGTCGTGATGAAGACAAAGGGTGTGGTTTAGATTGGAGGAACTCTACCGTTTGGCTTGCAGATGCATCCTTGGAAATCGAAAGCGCTTCTCCTTTGGCCGTTGAAGATGAAGAAGAAACAAGGATTGTGAGAGTGAATGTGAATGTGAATGATGTGGAAGATAAAATATTTTGGGGGATATGCATGGCATCTGCAGAGATATACCTTCTGACATTTTCAGTCAACATCACTGGACCCGACATTGGACCGGATTTATCAGACCGGACAACGAACCGGACTCACGAAACTGCTCTGCTTTTTGAGTGCTCTCTACTCTCTCCAGCTAAAATGCAAGCTCCTCAACCATCACTCACTGATGAAGCTCCCGAGATTTCCCATCAGGCTGTCCCGCAGCGAAACAAGGAAGTTTCAGATAGTGGACCCAGTGGTAGGCGCCCTGATATCTCACTTCAAGTTCCCCTTAGACCTATAGGGTTTGGAAGCACTAGTGGTGGAAGGGTTTTGGACCATTCTCAAAGTTTCACTAAAGGGATTTCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGAAATGTAGTGGATGGGGAAAGAAGCTGCCTACTTAGTTCAGACCCCAAGACAGCTGCAGAAGGTTCTAATATGGCTTCCATTTCTGAAATTGCATGGAAAAGATGTACTTCTCTTCCTGTTACACCTGCATCAAATCTGTCTCCTTCAGTTGCTACACCCATTTCTGCAAGGACATACAATGAAAAAATTAAGCCGCTTAAAGATGTTGATCATTCTAAGGTTTCACGGTCCCTTTCTGTACCTGGAAGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAGTGAACAGGAGCAACAAGATCAAAATGATGATCAAATAACTCCTGTGCCAGTAGAAGTTACTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTTGATGTGTGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATCAAATGGTTTAGCACAAAAGGAGACAAGAAATGTGATGTATGTAGGCAAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTGTGACAAGCTCTGTTCAACAACAAAACAGGCAGATGCACGGTCAGCAGAACCTACATCCAGAGTCAATAAGCGCTTGGCAAGACTTTGTTGTGCTTGTCCTGATCAGCACGATATGCTACTTTTTCTTTCTTGAACAGCTACTGCTTCCTGAATTTAAGACTCAAGCTATTATTATAGCAGCACCATTTGCCTTTACCTTGGGCCTCCTAGCATCTATTTTTGCAGTCATCCTGGCAATTAAAGAGTATATATGGACCTATGCTGCTCTGGAGTTTGCCCTTGAGGCTTTAACTGTGCATCTATTTTATAGCATGTTGCATTTGACGGCCATATATGCCATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGGCCATCAACTACGCATATATCCAATTTGTCACTTGGAGGCTTCAAGTCTCTTATGATGATAACCCAGTATGA 1785 0.4275 MNGMDVSSWMLIEDSADSEGDTSFSNIGHNEDDVESCTCDTAGKCGLFEDGESHEDEKGCGEFCRDEDKGCGLDWRNSTVWLADASLEIESASPLAVEDEEETRIVRVNVNVNDVEDKIFWGICMASAEIYLLTFSVNITGPDIGPDLSDRTTNRTHETALLFECSLLSPAKMQAPQPSLTDEAPEISHQAVPQRNKEVSDSGPSGRRPDISLQVPLRPIGFGSTSGGRVLDHSQSFTKGISSSRGFLRALSFKRKGNVVDGERSCLLSSDPKTAAEGSNMASISEIAWKRCTSLPVTPASNLSPSVATPISARTYNEKIKPLKDVDHSKVSRSLSVPGRNVVIVRSVSFSTRSEQEQQDQNDDQITPVPVEVTADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLIKWFSTKGDKKCDVCRQEVQNLPVTLLRVTSSVQQQNRQMHGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPEFKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALEALTVHLFYSMLHLTAIYAILLSSVLGFGIAMAINYAYIQFVTWRLQVSYDDNPV 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01078 594 PANTHER OS02G0165000 PROTEIN 180 590 - -
Spst6g01078 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 440 IPR013083 -
Spst6g01078 594 CDD RING_CH-C4HC3_MARCH 386 433 - -
Spst6g01078 594 ProSiteProfiles Zinc finger RING-CH-type profile. 378 439 IPR011016 GO:0008270
Spst6g01078 594 SMART ringv_2 385 433 IPR011016 GO:0008270
Spst6g01078 594 MobiDBLite consensus disorder prediction 174 218 - -
Spst6g01078 594 Pfam RING-variant domain 386 432 IPR011016 GO:0008270
Spst6g01078 594 ProSiteProfiles Zinc finger RING-type profile. 386 433 IPR001841 -
Spst6g01078 594 SUPERFAMILY RING/U-box 382 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01078 Spst-Chr6 9859490 9867814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01078 324 493 C3H Transcription Factor Family AT2G37950 26.630 7.91e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01078 - - vun:114188987 757.288