Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01069 ATGGGCCTAATCAGAAGCATGAGATCGAGGTCGCATCGCGTGGTGCAGGAGCAAGAAGAGTGTGTCGGCGACAGCATGAGACAGAGTTGTTGGGCCAACATGCCCCAAGAGCTTCTCCGAGAGGTTCTCCTCCGAATCGAGGCATCCGAGGACACGTGGCCGCCTCGGAAGAGCGTCGTCGCCTGCGCCGGCGTGTGTCGCAGCTGGAGACAAATCACCAAAGACATTGTCAAAACACCCGAACTTTCCTCCAAAATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTCCTCCGATGCTTTATAAAGCGCAACCGGTCCACCCAAACATACTATTTGTTTCTCAGTTTAACCAGTACACTAGCTGAAGATGGGAAGTTTCTTCTGGCTGCACGCAAATGCAGACGACCAACATGCACAGATTATATCATCTCTCTTGATGCAGATGATATGTCAAAGGGAAGCAACTCCTATGTTGGGAAACTAAGGTCAAATTTTCTTGGAACAAAGTTCACAATCTATGACAGCCAGCCACCCCATTCAGGGGCAAGGATTATGAAAAGTCACTCCACAAGGCTGGTCAATCTAAAACAAGTTTCGCCAAAGGTTCCTACAGGCAACTATCCAGTGGCCCATATCTCATATGAATTGAATGTGCTTGGCTCACGGGGGCCTAGGAGAATGCATTGTGTCATGGATTCTATTCCTGCTTCTGCAATTGAAGCTGGAGGGGTAGCCCCTACTCAGACCGAGTTTTCTCTTAACAACATAGATATGTTTCCTTCATTCCATTTTTTCCGATCAAAATCAAATCGTGTGGAAAACACTGTGTCTGGACCCCTGGTTGGTCAAAAGGATGGGATGCTTGTGTTGAGAAACAAGTCTCCTAGGTGGCATGAGCAACTTCAGTGTTGGTGCTTAAACTTTCATGGACGGGTGACTATTGCCTCGGTGAAAAACTTTCAGCTGGTTGCTTCTGCAGAAAATGGACATGCTGGACCAGAGCATGATAAGATTATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCTATTTCAGCATTTCAGGCATTTGCCATGTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1152 0.4714 MGLIRSMRSRSHRVVQEQEECVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRKSVVACAGVCRSWRQITKDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYYLFLSLTSTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDSQPPHSGARIMKSHSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPASAIEAGGVAPTQTEFSLNNIDMFPSFHFFRSKSNRVENTVSGPLVGQKDGMLVLRNKSPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGHAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAMCLSSFDTKIACE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01069 383 Gene3D - 24 84 - -
Spst6g01069 383 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Spst6g01069 383 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Spst6g01069 383 PRINTS Tubby superfamily signature 211 238 IPR000007 -
Spst6g01069 383 PRINTS Tubby superfamily signature 340 359 IPR000007 -
Spst6g01069 383 PRINTS Tubby superfamily signature 162 186 IPR000007 -
Spst6g01069 383 PRINTS Tubby superfamily signature 146 162 IPR000007 -
Spst6g01069 383 PRINTS Tubby superfamily signature 361 383 IPR000007 -
Spst6g01069 383 SUPERFAMILY Tubby C-terminal domain-like 80 383 IPR025659 -
Spst6g01069 383 FunFam Tubby-like F-box protein 88 383 - -
Spst6g01069 383 Pfam F-box domain 31 78 IPR001810 GO:0005515
Spst6g01069 383 Pfam Tub family 92 378 IPR000007 -
Spst6g01069 383 CDD F-box_AtTLP-like 31 75 - -
Spst6g01069 383 Gene3D Tubby Protein; Chain A 91 377 IPR025659 -
Spst6g01069 383 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Spst6g01069 383 PANTHER TUBBY-RELATED 16 381 - -
Spst6g01069 383 SUPERFAMILY F-box domain 26 75 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01069 Spst-Chr6 9781042 9784614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01069 8 383 TUB Transcription Factor Family AT2G47900 72.032 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Spst6g01069 Tub 6e-113 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01069 K19600 - gmx:100778346 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01069 6 9781042 9784614 Spst6g01069 6 9781042 9784614 ECH
Spst3g03093 3 80783543 80786061 Spst6g01069 6 9781042 9784614 PCT