Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01060 ATGGAACGTTCAGTCCTTGAACGTCTTGATTTTGGGAAGATGGGATTCGGGTGCAAGCATTACAGAAGAAGATGCAGGATTCGAGCTCCATGTTGCAATGAGGTCTATTCTTGCCGTCATTGTCATAACGAGGCAACGAGCATGCTGAATAAACCTTTTGATCATCACGAACTCGTTCGCCAGGATGTTGTACATGTTGTTTGTTCAGTTTGTGACACAGAGCAGCCAGTTGCCCAGGTTTGTACAAACTGTGGTGTCAGAATGGGAGAATATTTCTGCAGCATCTGCAAATTCTTCGATGATGATACCGGGAAACTACAGTTTCATTGTGATGAATGTGGGATATGCAGAGTTGGTGGTCGTGAGAATTTTTTCCACTGCAATAAGTGTGGGTCTTGCTATTCAACTAGTCTTCGTGATAATCATTTGTGTGTGGAGAACTCCATGAGGCATCATTGTCCCATTTGTTATGAGTACCTCTTCGACTCATTGAAAGACACTGCTGTTATGAAATGTGGTCACACAATGCATTCTGAATGTTACCATGAGATGATAAAGCGTGACAATTATTGTTGCCCCATATGCTCCAAGTCGGTAATTGACATGTCTAGGACATGGAAGAGAATTGATGAAGAGATTGAAGCAACTCTTATGCCCGATGACTATCGGCACAGAAAGGTTTGGATACTCTGTAATGACTGCAATGACACAACTGAAGTTTACTTTCACATTATTGGGCATAAATGTGGTCACTGCAACTCATATAATACTCGTGCTATAGCTCCTCCTGTTCTTCCTCGATGA 804 0.4229 MERSVLERLDFGKMGFGCKHYRRRCRIRAPCCNEVYSCRHCHNEATSMLNKPFDHHELVRQDVVHVVCSVCDTEQPVAQVCTNCGVRMGEYFCSICKFFDDDTGKLQFHCDECGICRVGGRENFFHCNKCGSCYSTSLRDNHLCVENSMRHHCPICYEYLFDSLKDTAVMKCGHTMHSECYHEMIKRDNYCCPICSKSVIDMSRTWKRIDEEIEATLMPDDYRHRKVWILCNDCNDTTEVYFHIIGHKCGHCNSYNTRAIAPPVLPR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01060 267 Pfam Zinc finger, C3HC4 type (RING finger) 153 195 IPR018957 GO:0046872
Spst6g01060 267 SUPERFAMILY RING/U-box 152 202 - -
Spst6g01060 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Spst6g01060 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 226 IPR013083 -
Spst6g01060 267 SMART ring_2 153 195 IPR001841 -
Spst6g01060 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Spst6g01060 267 SUPERFAMILY CHY zinc finger-like 16 87 IPR037274 GO:0008270
Spst6g01060 267 Gene3D - 227 262 - -
Spst6g01060 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Spst6g01060 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Spst6g01060 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 263 - -
Spst6g01060 267 FunFam RING finger and CHY zinc finger domain-containing protein 1 224 265 - -
Spst6g01060 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Spst6g01060 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01060 Spst-Chr6 9739822 9742922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01060 10 266 C2H2 Transcription Factor Family AT3G18290 39.695 1.23e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01060 K10144 - gmx:100812246 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01060 6 9739822 9742922 Spst6g01060 6 9739822 9742922 ECH
Spst3g03084 3 80723572 80726369 Spst6g01060 6 9739822 9742922 PCT