Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01056 ATGTCATACATTATTCATGATCTGTGTTCTGGTGGTAAACACCCTCCATTTTGTTGTTCGAATCTCATTGGGCTACTTTTTGTTTGGATGGGGGAAGGTATCCAAGGGAAGATGAGGGATTACCAACTGGCTGGACTAAATTGGCTCATACGATTGTATGAGAATGGGATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACCATATCTTTATTGGGTTATTTGCACGAGTTCAGAGGAATAAAAGGCCCACATATGGTGGTTGCTCCAAAATCTACACTTGGAAATTGGATGAATGAAATTCGTCGATTTTGTCCTGTTCTACGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGAGACATATACGAGAGGAACTTCTGGTTGCTGGGAAGTTTGATGTCTGTGTCACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTATGTTGCGTAGATTTAGTTGGCGGTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCTTTGCTGTCCAAAACAATGAGACTCTACAGTACAAACTATCGCCTCCTTATTACTGGCACACCACTTCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAGTTGCACAAGGTCCTCCGGCCATTTCTTCTTCGAAGGTTGAAATCAGATGTTGAGAAAGGGTTGCCACCTAAAAAGGAAACTATTCTTAAAGTAGGCATGTCCCAAATGCAGAAACAGTATTATAGAGCATTACTTCAGAAGGATCTTGAGGTTGTAAATGCTGGTGGTGAACGGAAACGCCTCCTGAACATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTACACGACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCTAGGGTTCTTATATTTTCACAGATGACTAGACTGCTAGACATACTTGAGGATTATTTAATGTTTCGTGGATATCAATATTGTCGCATTGATGGAAATACTGGTGGGGATGATAGAGATGCTTCCATTGATGCTTTCAACAAACCAGGGAGTGAGAAATTTGTCTTCCTTTTATCAACTCGTGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGACAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTTCGTTTTTGTACTGAGTATACAATTGAAGAAAAAGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTTTGGTGATTCAGCAAGGGCGATTAGCTGAGCAGAAGACGGTAAATAAAGATGAATTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACAGCTGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAGAAGGATGAAAACAGATTTGATATAAAAAAAATTGTTAGTGAGAACTGGATTGAACCACCTAAAAGGGAGCGGAAGCGCAACTATTCAGAGTCTGAATACTTCAAGCAAACAATGCGTCAAGGTGGTCCTACTAAACCAAAAGAACCTCGAATTCCTAGGATGCCCCAGTTGCATGATTTCCAGTTTTTCAACACACAAAGGTTGAGTGAGTTGTATGAAAAGGAAGTTCGCAATCTCATGCAAACACACCAGAAGAATCAGATAAGAGACTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACTGTTGAAGAGTTGGAAGAAAAGGAACGGTTGCTTGAAGAGGGATTTTCATCTTGGAGTCGGAGGGATTTTAATACTTTCATTAGGGCGTGCGAAAAATATGGCAGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAGACCGTGGAGGAAGTTGAAAGATATGCGAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCGTAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTAGAGTTAAAGATACAGTATGGGCAAAACAAAGGGAAGTTGTATAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTAAAGGCGGCATTTCGAACTTCACCGTTGTTTCGATTTGATTGGTTTGTTAAGTCTCGCACAACTCAGGAATTAGCAAGGAGGTGTGACACCCTCATTCGGCTAGTAGAAAAGGAAAATCAAGAATATGACGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCCAAAAACATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCGTCTTTGAAGAAGCGGAAGCAGTTAACCATGGATGATTATGCAAGCACGGGGAAGAGAAGAAAATAA 2739 0.3991 MSYIIHDLCSGGKHPPFCCSNLIGLLFVWMGEGIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSMLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRNLMQTHQKNQIRDSIDVDEPEEVGDPLTVEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTVEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNMTPSKRALARQTESPSLKKRKQLTMDDYASTGKRRK 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01056 912 Gene3D ISWI, HAND domain 590 688 IPR036306 GO:0003677|GO:0006338|GO:0031491
Spst6g01056 912 Coils Coil 846 877 - -
Spst6g01056 912 Gene3D iswi atpase 744 776 - -
Spst6g01056 912 FunFam Chromatin-remodeling complex ATPase 39 254 - -
Spst6g01056 912 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 494 IPR001650 -
Spst6g01056 912 CDD SANT 692 736 IPR001005 -
Spst6g01056 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 215 IPR014001 -
Spst6g01056 912 Gene3D - 39 254 IPR038718 -
Spst6g01056 912 Pfam Helicase conserved C-terminal domain 341 453 IPR001650 -
Spst6g01056 912 SUPERFAMILY Homeodomain-like 692 742 IPR009057 -
Spst6g01056 912 SMART sant 791 852 IPR001005 -
Spst6g01056 912 SMART sant 689 738 IPR001005 -
Spst6g01056 912 Pfam SLIDE 746 856 IPR015195 GO:0003677|GO:0005634|GO:0006338
Spst6g01056 912 FunFam ISWI chromatin-remodeling complex ATPase CHR11 777 880 - -
Spst6g01056 912 CDD DEXHc_SMARCA1_SMARCA5 35 255 IPR044754 GO:0005524
Spst6g01056 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 253 IPR027417 -
Spst6g01056 912 MobiDBLite consensus disorder prediction 861 912 - -
Spst6g01056 912 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 689 743 - -
Spst6g01056 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 536 IPR027417 -
Spst6g01056 912 CDD SF2_C_SNF 339 464 - -
Spst6g01056 912 Gene3D - 689 743 - -
Spst6g01056 912 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 36 896 - -
Spst6g01056 912 MobiDBLite consensus disorder prediction 861 877 - -
Spst6g01056 912 SMART helicmild6 369 453 IPR001650 -
Spst6g01056 912 Pfam SNF2-related domain 51 318 IPR000330 GO:0005524|GO:0140658
Spst6g01056 912 Gene3D - 777 880 - -
Spst6g01056 912 ProSiteProfiles SANT domain profile. 688 740 IPR017884 -
Spst6g01056 912 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 601 691 IPR036306 GO:0003677|GO:0006338|GO:0031491
Spst6g01056 912 SMART ultradead3 34 226 IPR014001 -
Spst6g01056 912 FunFam ISWI chromatin-remodeling complex ATPase CHR11 590 688 - -
Spst6g01056 912 SUPERFAMILY Homeodomain-like 744 866 IPR009057 -
Spst6g01056 912 FunFam ISWI chromatin-remodeling complex ATPase CHR11 259 551 - -
Spst6g01056 912 Gene3D - 259 551 IPR027417 -
Spst6g01056 912 MobiDBLite consensus disorder prediction 888 912 - -
Spst6g01056 912 Pfam HAND 602 682 IPR015194 GO:0003677|GO:0006338|GO:0031491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01056 Spst-Chr6 9701893 9707592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01056 59 480 RAD5 or RAD16-like Gene Family AT1G02670 27.129 2.44e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst6g01056 SNF2_N 9.1e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01056 K11654 - gmx:100809750 1729.92