Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01048 ATGTCTACCTCTAGAACCTCAGATGTTTCCCTCAAAGGATACGAGTCTAGCCAAACCCAAATGAATTTGTCTCTTCTTCAACGTAACACATCAACTTCTGGTGAGAGAAGAGGCCGAGGAAAGCAAGCAGAACCTGGAAGGTTTCTTGGGGTGAGAAGACGCCCTTGGGGTAGATATGCTGCTGAAATCAGAAATCCTTTAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTGAAGAAGCAGCTCTTGCTTATGACAGAGCTGCCCTGTCCATGAAAGGATGCCAAGCAAGAACCAACTTCGTATACTCTAAAGATACCAACATTTTCCAAAATGCTCTCACTCCTTTGAATGCTCAACCTCTCTTGCCACCTTCACATAACACTCACAACATACAACCAACCAATCAAGGTGGCCTATCTCACCTTGGTACTTTCACTTCCCACATTGAAAATCCTTCTGACTTGTATCATGACACTTCATATGGGTCACCTCAGGATGATATTTTCTTCTTCTCCAGTGAGTCTAACTCAGGCTATCTTGAATGCATAGTTCCCGGTAACTGTTTCAAGAAGAGCAATGACAGTGCTTCCGGTCGCGACCTAAAGGTTGGCCACGTTAACTCAAACTCCATGCAGGTTCAGCCACATTTTGACACCACTCAAGAAGCCTTGAATATGCAAACAACTGTGGCACCACTCTATGCAGATTTTTCTTGCCCAAGTGAACTTGGTAAAGGATCATGGGATAACCACCAATCATGGGATTACAGCTCCAATGAACTGGCTGCAATGTTTAAAAATCCATCAACGGTTGTTGAGGAAGGGTGCATGGATGCATTGCATCCCTTCACTGATAGTTCAAGCTATGGGCTAATGACTCCGGTTGTTTCTTCAACTACCTATTCTCCATCATGTCCCCCCTTTGGGAATGTTGGCTCCGGATACTCACCCTTCTGA 966 0.4451 MSTSRTSDVSLKGYESSQTQMNLSLLQRNTSTSGERRGRGKQAEPGRFLGVRRRPWGRYAAEIRNPLTKERHWLGTFDTAEEAALAYDRAALSMKGCQARTNFVYSKDTNIFQNALTPLNAQPLLPPSHNTHNIQPTNQGGLSHLGTFTSHIENPSDLYHDTSYGSPQDDIFFFSSESNSGYLECIVPGNCFKKSNDSASGRDLKVGHVNSNSMQVQPHFDTTQEALNMQTTVAPLYADFSCPSELGKGSWDNHQSWDYSSNELAAMFKNPSTVVEEGCMDALHPFTDSSSYGLMTPVVSSTTYSPSCPPFGNVGSGYSPF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01048 321 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Spst6g01048 321 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 28 194 - -
Spst6g01048 321 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Spst6g01048 321 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Spst6g01048 321 MobiDBLite consensus disorder prediction 1 22 - -
Spst6g01048 321 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Spst6g01048 321 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Spst6g01048 321 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Spst6g01048 321 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Spst6g01048 321 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Spst6g01048 321 FunFam Ethylene-responsive transcription factor 2 47 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01048 Spst-Chr6 9592065 9593030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01048 1 193 AP2-EREBP Transcription Factor Family AT5G18560 47.154 3.79e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst6g01048 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01048 - - var:108341653 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03073 3 80614302 80615351 Spst6g01048 6 9592065 9593030 PCT