Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01047 ATGGCAGTGGAAATGTGGGAAAAGGGGAAGATTCGTAGGGCATTGAATGGACAGAAAATGGGGCATTTAGGGTTGAAGTTCAATCCCCTCCCTTCAAAGGCAATTTTCATTCCATTTAACATCTCTGCGCCGCAAATCAATGCAATCGTTTTCCTTAACGCTTGGAAACAAAACAATGATATTGTCATACGCGGGAAAGGATCCGCTAGTGGTGGTCGCATACTCCGTTCTCCGGTTCGGGTCGGTGCAATGGAGCAGTACGGCCGGTCCAGCGAAGGTTCCCGGTCTGATCCGTCCCCGGAATGGGCCGGGCCCGGAGCTCAAACCGGCCTCGAAGAGCCCATGTGGCAATTGGGACTGGGTGTTGCGGAGGAATCGTATCCGCAACGCCCCGATGTGGCTGATTGCACTTACTATTTGAGGACCGGCTTCTGTGGCTTCGGTTCGCGGTGTCGGTTCAACCACCCTCGTGACCGTGGCACGGTTGTTGGAGCCGAGAGGACTGTGGGGGAGTATCCGGAACGAGTTGGCCAGCCTGTGTGCCAGTATTACATGAGGACAAGAACGTGCAAGTTTGGTTCGTCTTGCAAGTACCACCACCCGAAGCAGGCAGGAGGTGCTGCTACCCCTGTGTCGCTAAACTATTATGGATATCCATTGCGACCGGGTGAGAAGGAGTGTTCGTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCCGTTCCTGCTGGCTTCCAAATTCCAGCACCATCACCAGTTGCCCCCGTTTCGCCTTTGCCTGTACCAGTACCTTCTCCATTATATTCAACCATGCAGCCCCCACCTGGTCCTTCATCCCAGCAAATTGGTGTGCTGGTTGCAAGGCCTCCTCTGCTGCCTGGCTCATTAGTCCAGAGCCCCTATGGACCTGTGGTACTGTCACCTGCCATGGTACCTATTTCTGGCTGGGGTCCTTATCAAGCTTCTGCAACAGGTGCTGTACTTCCTTCTGGTACTCCTAATGTTGGTTCACCACAGCTTTACGGGATAACACAACTACCTTCATCAGCAGCTGCCTATCCTGGACCTTATCAAGCTTCTGGTTCCTCAGTTGGTCCTTCAAGCAGTAATCAGAAGGAGCAGGCATTTCCAGAAAGGTCTAACCAACCAGATTATCAGTATTATCCGAAAACAGGGGAGGTTAAATTTGGTCCATCTTATAGGTATAACCCTCCACAAGAAACGACTGCACCAAAAGCAAATGTGACTCTTAGTCCTGCTGGTCTTCCTTTGCGCCCGGGACTAAAACTGAAATTTAGCCCTGATGCAGTGTATAGGTTCTATATAGCTTGCTGTATTGCCAGTATAGCAGTGGGGCAGCCCCTTCCCACTACAAGGGCTGCCATAGGGGCATCACCTTGTACTCATTATGCACAACATGGAGTATGTAAGTTTGGTTCTGCATGTAAATTCGATCATTCTATGGGATCACTGAGTTATAGTCCTTCTGCTTCTTCCTTGGCTGACATGCCAGTTGCACCCTATCCTGTTGGTTCAACAATTGGTACTCTTGCTCCATCATCTTCATCGTCAGAGTTGCGGCTGGAACTTTCCTCAGGATCCAGCAAGGAGTCTGTTCCATCCAGAATGTCTTCATCAACAGGAATGTTGACTGGGTCAATTGGCTTGACTTTGTCGACTGGTGGACCTGTTTCTCAATCAAGTAGTCAGCCATCTGCTCAAAGTTTGGATCCATTAGCCACTGCCACTAGCACCACAAGTAGCAATGTCTCTCACACCTCAAGCTAA 1809 0.5003 MAVEMWEKGKIRRALNGQKMGHLGLKFNPLPSKAIFIPFNISAPQINAIVFLNAWKQNNDIVIRGKGSASGGRILRSPVRVGAMEQYGRSSEGSRSDPSPEWAGPGAQTGLEEPMWQLGLGVAEESYPQRPDVADCTYYLRTGFCGFGSRCRFNHPRDRGTVVGAERTVGEYPERVGQPVCQYYMRTRTCKFGSSCKYHHPKQAGGAATPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPVPAGFQIPAPSPVAPVSPLPVPVPSPLYSTMQPPPGPSSQQIGVLVARPPLLPGSLVQSPYGPVVLSPAMVPISGWGPYQASATGAVLPSGTPNVGSPQLYGITQLPSSAAAYPGPYQASGSSVGPSSSNQKEQAFPERSNQPDYQYYPKTGEVKFGPSYRYNPPQETTAPKANVTLSPAGLPLRPGLKLKFSPDAVYRFYIACCIASIAVGQPLPTTRAAIGASPCTHYAQHGVCKFGSACKFDHSMGSLSYSPSASSLADMPVAPYPVGSTIGTLAPSSSSSELRLELSSGSSKESVPSRMSSSTGMLTGSIGLTLSTGGPVSQSSSQPSAQSLDPLATATSTTSSNVSHTSS 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01047 602 Gene3D - 209 254 - -
Spst6g01047 602 MobiDBLite consensus disorder prediction 364 391 - -
Spst6g01047 602 MobiDBLite consensus disorder prediction 85 108 - -
Spst6g01047 602 ProSiteProfiles Zinc finger C3H1-type profile. 468 496 IPR000571 GO:0046872
Spst6g01047 602 ProSiteProfiles Zinc finger C3H1-type profile. 221 249 IPR000571 GO:0046872
Spst6g01047 602 Gene3D - 128 208 - -
Spst6g01047 602 SUPERFAMILY CCCH zinc finger 178 202 IPR036855 GO:0046872
Spst6g01047 602 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 472 495 IPR000571 GO:0046872
Spst6g01047 602 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 157 IPR000571 GO:0046872
Spst6g01047 602 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 178 202 IPR000571 GO:0046872
Spst6g01047 602 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 223 247 IPR000571 GO:0046872
Spst6g01047 602 PANTHER PROTEIN PHOSPHATASE RELATED 121 530 - -
Spst6g01047 602 ProSiteProfiles Zinc finger C3H1-type profile. 175 203 IPR000571 GO:0046872
Spst6g01047 602 ProSiteProfiles Zinc finger C3H1-type profile. 130 158 IPR000571 GO:0046872
Spst6g01047 602 SMART c3hfinal6 175 202 IPR000571 GO:0046872
Spst6g01047 602 SMART c3hfinal6 221 248 IPR000571 GO:0046872
Spst6g01047 602 SMART c3hfinal6 468 495 IPR000571 GO:0046872
Spst6g01047 602 SMART c3hfinal6 130 157 IPR000571 GO:0046872
Spst6g01047 602 SUPERFAMILY CCCH zinc finger 132 158 IPR036855 GO:0046872
Spst6g01047 602 MobiDBLite consensus disorder prediction 532 602 - -
Spst6g01047 602 MobiDBLite consensus disorder prediction 367 391 - -
Spst6g01047 602 SUPERFAMILY CCCH zinc finger 471 498 IPR036855 GO:0046872
Spst6g01047 602 SUPERFAMILY CCCH zinc finger 223 248 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01047 Spst-Chr6 9574643 9589486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01047 84 570 C2H2 Transcription Factor Family AT5G18550 52.410 1.75e-145 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst6g01047 zf-CCCH 2.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01047 - - gmx:100812433 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01047 6 9574643 9589486 Spst6g01047 6 9574643 9589486 ECH
Spst3g03072 3 80606592 80610423 Spst6g01047 6 9574643 9589486 PCT