Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01046 ATGAGCGAGAGAGGGAAAGACGAAGGAATCGTGATAGAAAACCCTTATTATGGAACCTTCCAAGGCGTCACCAACTATTATCCTCTTCAATGTAATCACCCTCCATCTTTTTCTGCTGCTCTCCCCCGCACTTATTACCAACAACAAGGACACCACGTCGTTCCAGGTATACATTCTCGTTACTCTGAATCTGATGTTTTCTATGCTATTGCTGAAGGAAGACCTTTGAGAGAACGTCGTCTCCCATGTTGTGGACTTGGTTATGGTTGGCTTTTGTTCATCATTGGTTGGGTTCTTGGTGGTGCTCCTTGGTACGTCGGAACTTTTGTTTTAGTGTTTGTACAGATGGATTCTCGGGAAAAACCTGGATTAATTGCATGTGCAATTGCTTCCTTCATCACTATGGTAGCTGTAATATCTCTTGGAGTCACACAAGGAGATCTTCCATTGAAGCACACTGTGAAAGTTACCACAACTGTGGTTAAATTATGTAATTTTCAATGTGATGTCTGTGTTTTGCAGTTTCACCAGTACCAGGTTGTTGGGAGGGCTCTCCCAACGGAAGCAGATCAGCACCCTAAGATTTACCGCATGAAGCTTTGGGCCACCAACGAGGTTCGCGCCAAATCCAAGTTCTGGTATTTTCTGAGGAAGCTGAAAAAGGTCAAGAAGAGCAATGGTCAAATGCTCGCCATCAACGAGATCTTTGAGAAGAACCCCACCAAGATTAAGAACTATGGTATATGGCTGAGGTATCAAAGTAGGACCGGGTATCACAACATGTACAAGGAGTACCGTGACACCACTCTGAATGGTGCAGTTGAGCAGATGTATAATGAGATGGCTTCCCGTCACAGGGTCAGATGCCCTTGCATCCAAATTATTAAGACTGCGACCATTCCAGCCAAGCTTTGCAAGAGGGAGAGCACCAAACAATTCCACAACTCAAAAATCAAGTTTCCTTTGGTTTTCAAGAAAGTTAGGCCACCATCCAGGAAGCTGAAGACCACATACAAGGCTAAAAAGCCCAACTTGTTTATGTAA 1044 0.4416 MSERGKDEGIVIENPYYGTFQGVTNYYPLQCNHPPSFSAALPRTYYQQQGHHVVPGIHSRYSESDVFYAIAEGRPLRERRLPCCGLGYGWLLFIIGWVLGGAPWYVGTFVLVFVQMDSREKPGLIACAIASFITMVAVISLGVTQGDLPLKHTVKVTTTVVKLCNFQCDVCVLQFHQYQVVGRALPTEADQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRCPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKAKKPNLFM 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01046 347 Gene3D - 167 240 - -
Spst6g01046 347 Hamap 50S ribosomal protein L18Ae [rpl18a]. 175 238 IPR028877 -
Spst6g01046 347 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 176 297 IPR023573 GO:0003735|GO:0005840|GO:0006412
Spst6g01046 347 Gene3D - 241 316 - -
Spst6g01046 347 SUPERFAMILY RplX-like 240 315 - -
Spst6g01046 347 FunFam 60S ribosomal protein L18a 241 316 - -
Spst6g01046 347 FunFam 60S ribosomal protein L18a 170 240 - -
Spst6g01046 347 PANTHER 60S RIBOSOMAL PROTEIN L18A 173 346 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01046 Spst-Chr6 9564979 9571561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01046 135 347 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 77.273 2.16e-119 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01046 K02882 K22683 cave:132168791 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01046 6 9564979 9571561 Spst6g01046 6 9564979 9571561 ECH