Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01044 ATGGTTTTGAGGGATGGTTCCCTCTATGCAGAACCTCTCAAGCTTGATGCATTGTTTCATATTATTTTGGAGCAGGAATGGGGCATATTTGCATACATATTAAGCTCCGTGCAAGTGGTGGAAACAAGTTCAAAAACACCTGGTCCTGCTGCTCAATCAGCTGTTAGGGCCCTTGCTCGTTCAGGAATGAAAATCGGTCTTACAGAGGATGTGACACCCATTCCTTCGGGTAGCACTCGTAGAAAGAGTGGTAGAAGAGGCATTGATCCGAGTTTTAGTTTGTTACTGACAAACACGTTCATTTATTTGTTGAAAGTTCTCTTTGATGCTTCGGGGTTTGCAAATGGTGCCTAA 354 0.435 MVLRDGSLYAEPLKLDALFHIILEQEWGIFAYILSSVQVVETSSKTPGPAAQSAVRALARSGMKIGLTEDVTPIPSGSTRRKSGRRGIDPSFSLLLTNTFIYLLKVLFDASGFANGA 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01044 117 Pfam Ribosomal protein S11 36 86 IPR001971 GO:0003735|GO:0005840|GO:0006412
Spst6g01044 117 Gene3D Ribosomal protein S11 9 88 IPR036967 GO:0003735|GO:0005840|GO:0006412
Spst6g01044 117 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 38 84 IPR001971 GO:0003735|GO:0005840|GO:0006412
Spst6g01044 117 SUPERFAMILY Translational machinery components 37 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01044 Spst-Chr6 9558970 9560836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01044 25 79 Cytoplasmic Ribosomal Protein Gene Family AT2G36160 60.000 1.70e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01044 K02955 - gmx:100785807 73.559