Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01007 ATGGAGGAGGATGAGATTCAAGCACAGGCAGCATGTAAGTTCCCTAGGGTTGGAAATGGAAGGAGCGACCAATATCAAGAGGAGGAAGAAGAAGGAGACATAAGAAGAAGAGGTATTGGTGGTGGAGGAGGAGGAGGAGGAAGTGAAGCTAGCACAAACCATTTCCAAAGTAGTTGGCACCACTCTTCGAGAATCATAAGGGTGTCTCGAGCATCTGGTGGCAAAGACAGGCACAGCAAGGTGATGACCTCAAAGGGGTTAAGAGACAGAAGGGTTAGACTCTCTGTGACCACAGCCATTCAGTTCTATGACCTTCAAGATCGCTTGGGCTATGACCAACCTAGTAAGGCTGTGGAGTGGTTAATCCAAGCTGCTTCAGATGCTATCTCAGAGCTTCCTTCTCTCAACAACCCCTTCCCTGATACCCCTAAGCAGCCAAGTGATGAGAAAAGGCCAACTAGTGGTCAGCGTGGTGGTCAATCACAGGCCTTTGATGATGCAGATGGAGACACCAATTTCCTCCAGCAAAGCCAGAACCTCTCTCTCTCCAAATCTGCTTGTAGCAGCACTTCCGAGACAAGCAAAGGGTCTGGCTTGTCCCTCTCAAGGTCTGAGATCCGTGTGAACCGTGTGAAGGCAAGGGAGAGGGCAAGGGAGAGAGCAGCAAAAGAGAAGGGGAAAGATAAAGACAAGGAGAAAGAGAAAGAGAAAGAGAAAGAGAACGATTCTGGCATTGCACATCACCACCACCACCACCACCACCAACACAATATGTCTCACACTGCTTCCTTCACTGAGCTTCTCACCGGTGGGATTGGGAGCACAGTAACAGTTAATCCCACCACTGCAGCAAGTCCTAATGGATCATCAGTTCATCAGATCCATGAGGGCCATGATGAGGCCAACCTATTCAACAAGGGAAGACAACAACAACATTGGTCTTCACTAGTGACACCTATGGACTACTTAAGCTCAGGAGGCCTCTTGGTGGGGCCTTCTTCATCATCTGCAAGAACTCAACAACAACACCAACACCAACACCAACACCAATCTTCTTCAGGACAGTTCCAACTTGGACATGCCCTTCCCATCTCACCATTCAGTGGAGAAAATCACTCGGATCAGCTGCAGCATTTTTCCTTCATGCGAGACCACCTTAACATGCCAGCTGTGGTCACTTCTTCTTCTTCTGCTTCTCAGCCCAGCGGGGGTGACAATTACAACCTCAGCTTCAGCATCTCTTCGGGCCTTGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCCTTTTTGCCTCACCTCCAGAGGTTTCAACCTTTAGACGGATCATCCAATCTACCTTTCTTTATCGGAGCTCCTGCTCCTTCTTCTGCTCCTCCAACCATTGACAACAACAATAATAACCACCACCACCACCTTCAGTTCTCTCCCGTCTTCGATGGCCGCTTGCAACTTTGCTATGGCGATGGAACAAGGCATTCTGACCACAAGGGCAAGGGAAAGAACTAA 1515 0.4911 MEEDEIQAQAACKFPRVGNGRSDQYQEEEEEGDIRRRGIGGGGGGGGSEASTNHFQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIQAASDAISELPSLNNPFPDTPKQPSDEKRPTSGQRGGQSQAFDDADGDTNFLQQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARERAAKEKGKDKDKEKEKEKEKENDSGIAHHHHHHHHQHNMSHTASFTELLTGGIGSTVTVNPTTAASPNGSSVHQIHEGHDEANLFNKGRQQQHWSSLVTPMDYLSSGGLLVGPSSSSARTQQQHQHQHQHQSSSGQFQLGHALPISPFSGENHSDQLQHFSFMRDHLNMPAVVTSSSSASQPSGGDNYNLSFSISSGLAGYNRGTLQSNSPSFLPHLQRFQPLDGSSNLPFFIGAPAPSSAPPTIDNNNNNHHHHLQFSPVFDGRLQLCYGDGTRHSDHKGKGKN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01007 504 MobiDBLite consensus disorder prediction 152 204 - -
Spst6g01007 504 MobiDBLite consensus disorder prediction 131 261 - -
Spst6g01007 504 Pfam TCP family transcription factor 73 225 IPR017887 -
Spst6g01007 504 MobiDBLite consensus disorder prediction 69 88 - -
Spst6g01007 504 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 35 366 IPR005333 GO:0003700
Spst6g01007 504 MobiDBLite consensus disorder prediction 328 359 - -
Spst6g01007 504 ProSiteProfiles TCP domain profile. 74 132 IPR017887 -
Spst6g01007 504 MobiDBLite consensus disorder prediction 70 88 - -
Spst6g01007 504 MobiDBLite consensus disorder prediction 327 369 - -
Spst6g01007 504 MobiDBLite consensus disorder prediction 207 245 - -
Spst6g01007 504 MobiDBLite consensus disorder prediction 22 37 - -
Spst6g01007 504 ProSiteProfiles R domain profile. 207 225 IPR017888 -
Spst6g01007 504 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01007 Spst-Chr6 9246807 9248321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01007 52 504 TCP Transcription Factor Family AT4G18390 41.856 2.02e-73 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst6g01007 TCP 5.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01007 - - gmx:100787772 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01007 6 9246807 9248321 Spst6g01007 6 9246807 9248321 ECH