Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01005 ATGGGTTTTGAGCCCTTGGATTGGTATTGTCGGCCAGTTGCAAATGGAGTATGGACAAAAACAGTGGTGAATGCCTTTGGTGCTTACACCCCTTGTGCGGTTGATACTCTTGTCATCTCCATTTCTTATTTGATACTTCTAGGCCTCTGCATATACCGCACATGGTTGATTAACAAGGATTTCAAAGTGAAGAGGTTCCGTCTAAGGTCAAACATTTACAATTATGTACTGGGATTGTTAGCTTTATATTGTGTGGCAGAGCCATTATACAGATTGATCATGGGAGTATCAGTTCTAAATTTAGATGGCCAGACTCAACTTGCTCCATCTGAGGTAGTTTCACTGATCATCAAGGCTCTTGCGTGGTGCTCTATGCTAATTTTGATTGGGGTTGAAACTAAAGTCTACATCCTAGAATTCCGATGGTTTGTCAGATTTGGTTTGATTTATGCTATTGTAGGGGAAGCTGTAATGTTCAATTTCATCATTTCCTTGAAGGATTTCTATAGCAGCTCTGCATTGTATTTATACATCAGTGAGGTGGTTGCTCAGGTTTCCTTTGGAATACTTTTGCTTGTGTATCTTCCCGCTTTGGATCCTTATCCAGGTTATACCCCCATCGGGAGTGATATGATTGCTGAAGCTGCATATGATGAACTCCCTGGAGGAGAAATGATATGTCCGGAGAGGAGTGCCAACATATTGTCGAGAATAATGTTTTCTTGGATGAATCCCATCATGAAACTAGGATATGAAAGACCACTGAATGAGAAAGATATATGGAAATTAGATACATGGGAACGGACAGAGACACTGATCAATAAGTTCCAGAAATGTTGGGTAGAGGAATCTCGGAAGCCAAAACCATGGCTTTTAAGAGCATTGAATGCAAGCCTTGGAGGAAGGTTTTGGTGGGGAGGCTTTTGCAAGTGGGCTAATGCTATGCAGAATGGTGACCCATCCTGGACTGGCTACGTTTATGCCTTCTCAATATTTGTTGGAGTGGTCTTTGGTGTGTTATGTGAAGCTCAATATTTTCAGAATGTTATGCGTGTTGGTTACCGGTTAAGATCAACATTGGTGGCTGCAGTCTTTCGCAAGTCGCTAAGGCTTACTCATGAAGCACGGAAGCAATTTGCAACTGGAAAAATAACCAACTTGATGACTACTGATGCTGAGGCACTTCAGTACTGCCTCTTTGTGATTACTCCAATTCGAATTTCTGTTGCTATGGTTCTTCTTTACCAACAACTTGGTGTTGCTTCCCTTCTTGGTGCATTGATGCTAGTTCTTATGTTTCCGTTACAGACATTTATCATCAGCAGAATGCAGAAGTTGTCTAAGGAGGGATTACAACGAACAGACAAAAGAATTGGTCTTATGAATGAAATTTTGGCTGCTATGGACACTGTAAAGTATTATGCGTGGGAGAGTAGTTTCCAGTCTAAAGTACAGATTGTCCGAAATGATGAATTATCATGGTTTCGGAAAGCATCATTACTTGGAGCGTGCAATGGATTCATACTAAATAGCATTCCAGTTTTTGTAACTGTTATTACATTTGGAGTATTCACCTTGCTTGGAGGGGATCTGACACCTGCTAGAGCTTTTACATCACTTTCTCTGTTTTCTGTGCTCCGATTTCCTCTCTTCATGCTTCCTAATACTATAACCCAGGTGGTTAATGCAAATGTATCTTTGAAACGACTAGAAGATTTGCTCTTAGCGGAAGAGAGAATACTTCTACCAAATCCACCTCTTGATCCGAGGTTACCAGCTATTTCAATCAAGAATGGATACTTTTCTTGGGATGCAAAGGCGGATAGGGCGACATTATCAAACATAAATCTGGATATACCTGTTGGTTGCCTAGTTGCAGTTGTTGGCAGTACAGGAGAAGGGAAGACATCATTAGTATCTGCAATGCTTGGAGAAATTCCTTCAATTGGAGATTCAACTATTGTTATGAGAGGCGCAGTTGCTTATGTACCCCAAGTTTCGTGGATTTTTAATGCAACTGTACGAGATAATGTTTTATTTGGTTCTGACTTTGACCCAACAAGATATCAAAGGGCAATAAATGTGACCGAACTGCAACATGACCTTGAGTTATTTCCTGGTGGTGATCTCACTGAAATTGGTGAAAGAGGAGTAAACATCAGCGGTGGTCAAAAGCAGAGAGTTTCCATGGCTAGAGCTGTCTACTCCAATTCTGATGTGTACATCTTTGATGACCCCCTAAGTGCTCTAGATGCTCATGTGGCTAGACAGGTTTTTGATAAATGCATCAAGGGAGAATTGAGAGGGAAGACCCGAGTTCTTGTTACGAATCAGTTGCATTTCCTCTCTCAGGTTGATAGAATCATTTTGGTCCATGAAGGTATGGTGAAGGAGGAGGGAACTTTTGAAGAACTATCTAACAACGGACCACTGTTCCAGAAGCTTATGGAAAATGCAGGAAAGATGGAGGAGTATGAAGAAGAAACGGTAGATACTGAAATCATTGATCAGAAGCCTTCTTCAAAACCAGTGGCCAATGGAGAGGTTGATGATTATGCAAAGAGTGGAAATAAACCAAAAGAAGGAAAATCTGTCCTTATTAAACAAGAAGAACGGGAAACAGGGGTTGTCAGCTTGAATGTTCTTATAAGGTACAAGAATGCATTAGGTGGGTTTTGGGTGGTTCTGATACTATTCGCATGCTATGTCTCTACGGAAACACTGCGAATATCAAGTAGCACATGGTTAAGCCATTGGACTGATAAAAGTGCTACAGAGGGTTACAACCCTGCCTTCTACAATTTGATATATGCAACTCTATCATTTGGTCAGGTTTTGGTGACTTTAACAAATTCTTATTGGTTAATCATATCAAGTCTTTATGCTGCCCGAAGGTTGCATGAGGCCATGCTTAGCTCCATATTACGGGCTCCCATGGTGTTTTTCCAAACAAATCCACTCGGAAGAGTTATCAACAGGTTTGCAAAGGATCTAGGTGACATTGATCGTAATGTAGCTCCTTTTGTCAATATGTTTCTAGGTCAAGTGTCCCAACTTCTTTCAACCTTCATCCTCATAGGCATTGTCAGCACAATGTCTTTGTGGGCAATACTGCCATTGTTGGTGTTGTTTTACGTAGCTTATCTATACTATCAGAGCACTGCTCGTGAAGTGAAGCGCTTAGACTCGATCAGCAGATCTCCTGTTTATGCACAGTTTGGAGAAGCATTGAATGGCTTATCAACAATTCGTGCTTACAAAGCATATGATCGAATGGCCGATATAAATGGGAAATCCATGGACAATAACATCCGATTCACGTTGGTGAACATAAGCGGAAACCGATGGCTTGCAATCCGATTGGAAACTTTGGGAGGCCTCATGATATGGTTGACTGCAACTTTTGCTGTCATGCAGAATGGGAGAGCCGAAAACCAGGAAGCATTCGCTTCCACCATGGGGTTGTTACTTAGTTATGCTCTGAACATTACTAGTTTGCTTACCGGTGTGTTGAGGCTTGCAAGTTTGGCCGAGAATAGTTTAAATGCAGTTGAACGGATTGGCACTTACATAGATTTACCCTCGGAGGCTCCCTCTATCATTGATGATAATCGCCCTCCTCCTGGCTGGCCTTCTTCAGGCTCAATAAGATTTGAAGATGTTGTTCTTCGCTACAGACCCGAACTTCCTCCTGTGTTGCATGGCTTGTCTTTTACCATTTTCCCGAGTGATAAGGTTGGCATAGTTGGGAGGACAGGTGCAGGAAAATCCAGCATGCTTAATGCATTGTTTCGAATTGTGGAATTGGAACGAGGAAGAATATTAATTGACGATTATGATGTTGCAAAGTTTGGGCTAGCTGATTTGCGTAAAGTTCTGGGCATTATACCACAAGCTCCCGTTCTCTTTTCAGGAACTGTGAGATTTAATCTTGATCCTTTTAATGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAGAGGGCACATTTAAAGGATGTGATACGGAGGAATTCTTTGGGGCTGGATGCTGAGGTATCTGAGGCAGGGGAAAACTTCAGTGTTGGACAAAGGCAACTCTTGAGTCTTTCCCGGGCTTTATTGCGAAGATCAAAGATATTAGTACTTGACGAAGCAACCGCAGCAGTTGATGTTAGAACAGATGCACTCATACAGAAAACTATTCGAGAGGAATTTAAATCCTGTACAATGCTCATTATTGCTCATCGCCTTAACACTATTATTGATTGTGATCGGATTCTTTTGCTTCATGGTGGTAAGGTTCTTGAATATGATACCCCTGAGGAGCTGCTGTTAAATGAAGGTAGTGCTTTCTCTAAGATGGTCCAAAGCACAGGAGCTGCAAATGCACAATATTTACGCAGCTTGGCACTTGGTGGAGATAAATCTGAAAGAGAAGAAAACAGGCATCTAGATGGACAGAGAAAATGGTTGGCTTCTTCTCGGTGGGCTGCAGCAGCCCAATTTGCTCTTGCTGTTAGTCTCACCTCATCCCAGAATGACCTACAACGATTGGAAGTGGAAGACGAGAATAGTATTTTGAAGAAGACAAAGGATGCCCTGATAACTTTGCAAGGGGTTTTGGAAAGGAAGCATGATAAAGAAATTGAGGAATCTTTAGAGCAGCGTCAAATATCCCCCGAGGGATGGTGGTCATCGCTTTATAAAATGATTGAAGGTCTCGCTATGATGAGCAGATTGACCAGGAACAGGCTCCATCAATCAGACTTCGGTTTTGAGGACAGATCAATTAACTTCGATGAAATAGATATCTAG 4797 0.4184 MGFEPLDWYCRPVANGVWTKTVVNAFGAYTPCAVDTLVISISYLILLGLCIYRTWLINKDFKVKRFRLRSNIYNYVLGLLALYCVAEPLYRLIMGVSVLNLDGQTQLAPSEVVSLIIKALAWCSMLILIGVETKVYILEFRWFVRFGLIYAIVGEAVMFNFIISLKDFYSSSALYLYISEVVAQVSFGILLLVYLPALDPYPGYTPIGSDMIAEAAYDELPGGEMICPERSANILSRIMFSWMNPIMKLGYERPLNEKDIWKLDTWERTETLINKFQKCWVEESRKPKPWLLRALNASLGGRFWWGGFCKWANAMQNGDPSWTGYVYAFSIFVGVVFGVLCEAQYFQNVMRVGYRLRSTLVAAVFRKSLRLTHEARKQFATGKITNLMTTDAEALQYCLFVITPIRISVAMVLLYQQLGVASLLGALMLVLMFPLQTFIISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKYYAWESSFQSKVQIVRNDELSWFRKASLLGACNGFILNSIPVFVTVITFGVFTLLGGDLTPARAFTSLSLFSVLRFPLFMLPNTITQVVNANVSLKRLEDLLLAEERILLPNPPLDPRLPAISIKNGYFSWDAKADRATLSNINLDIPVGCLVAVVGSTGEGKTSLVSAMLGEIPSIGDSTIVMRGAVAYVPQVSWIFNATVRDNVLFGSDFDPTRYQRAINVTELQHDLELFPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSNNGPLFQKLMENAGKMEEYEEETVDTEIIDQKPSSKPVANGEVDDYAKSGNKPKEGKSVLIKQEERETGVVSLNVLIRYKNALGGFWVVLILFACYVSTETLRISSSTWLSHWTDKSATEGYNPAFYNLIYATLSFGQVLVTLTNSYWLIISSLYAARRLHEAMLSSILRAPMVFFQTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSLWAILPLLVLFYVAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDNNIRFTLVNISGNRWLAIRLETLGGLMIWLTATFAVMQNGRAENQEAFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERIGTYIDLPSEAPSIIDDNRPPPGWPSSGSIRFEDVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDYDVAKFGLADLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLHGGKVLEYDTPEELLLNEGSAFSKMVQSTGAANAQYLRSLALGGDKSEREENRHLDGQRKWLASSRWAAAAQFALAVSLTSSQNDLQRLEVEDENSILKKTKDALITLQGVLERKHDKEIEESLEQRQISPEGWWSSLYKMIEGLAMMSRLTRNRLHQSDFGFEDRSINFDEIDI 1598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01005 1598 SMART AAA_5 621 799 IPR003593 GO:0016887
Spst6g01005 1598 SMART AAA_5 1242 1435 IPR003593 GO:0016887
Spst6g01005 1598 CDD ABCC_MRP_domain1 594 794 - -
Spst6g01005 1598 Pfam ABC transporter 612 747 IPR003439 GO:0005524
Spst6g01005 1598 Gene3D ABC transporter type 1, transmembrane domain 273 580 IPR036640 GO:0005524|GO:0016020
Spst6g01005 1598 Gene3D ABC transporter type 1, transmembrane domain 858 1197 IPR036640 GO:0005524|GO:0016020
Spst6g01005 1598 SUPERFAMILY ABC transporter transmembrane region 893 1196 IPR036640 GO:0005524|GO:0016020
Spst6g01005 1598 ProSitePatterns ABC transporters family signature. 720 734 IPR017871 GO:0005524|GO:0016887
Spst6g01005 1598 FunFam Multidrug resistance-associated protein member 4 1200 1452 - -
Spst6g01005 1598 CDD ABCC_MRP_domain2 1214 1434 - -
Spst6g01005 1598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1206 1448 IPR027417 -
Spst6g01005 1598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1216 1450 IPR003439 GO:0005524
Spst6g01005 1598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 590 817 IPR027417 -
Spst6g01005 1598 ProSitePatterns ABC transporters family signature. 1353 1367 IPR017871 GO:0005524|GO:0016887
Spst6g01005 1598 CDD ABC_6TM_ABCC_D2 895 1191 IPR044726 GO:0140359
Spst6g01005 1598 FunFam ABC transporter C family member 2 279 579 - -
Spst6g01005 1598 SUPERFAMILY ABC transporter transmembrane region 287 570 IPR036640 GO:0005524|GO:0016020
Spst6g01005 1598 Gene3D - 588 841 IPR027417 -
Spst6g01005 1598 Gene3D - 1199 1452 IPR027417 -
Spst6g01005 1598 MobiDBLite consensus disorder prediction 829 860 - -
Spst6g01005 1598 FunFam ABC transporter C family member 2 588 834 - -
Spst6g01005 1598 Pfam ABC transporter 1233 1381 IPR003439 GO:0005524
Spst6g01005 1598 CDD ABC_6TM_ABCC_D1 317 570 IPR044746 GO:0140359
Spst6g01005 1598 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 896 1179 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst6g01005 1598 FunFam ABC transporter C family member 2 859 1197 - -
Spst6g01005 1598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 594 818 IPR003439 GO:0005524
Spst6g01005 1598 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 229 1456 - -
Spst6g01005 1598 Pfam ABC transporter transmembrane region 895 1147 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst6g01005 1598 Pfam ABC transporter transmembrane region 315 550 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst6g01005 1598 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 310 562 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01005 Spst-Chr6 9213260 9234215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01005 1213 1456 Calmodulin-binding Proteins AT2G36910 30.400 8.85e-29 124