LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst6g00982	ATGAACCATATCGACCACCCCAACGCCTTAAAAACATCATTGAAACCGGGTCAGTACGTGGGAGTGGGTGAATCAGAAGATGTGCAGGCATTCTACTACTTCATTGAGTCAGAGAAGAATCCAAAGGAGGATCCTCTCATGCTTTGGCTCACCGGTGGCCCTGGTTGCTCAGCCCTCTCTGGCCTTGTCTTTGAAATAGGTCCACTTGGTTTTAAAAATGAGGAGTATAATGGGAGCCTTCCCAAGTTGGTCTTGAGGCCACACTCATGGACAAAGGTTAGTAGCATTATATTTGTAGACTTGCCTGTTTTCACTGGATTCACTTATCCCACAACAGACTCTGCTGCTCAACGAAGTGACTGGAAACTTGTTCATCAAGTCCATCAATTTCTTAGGAAGTGGCTGATTGATCATCCAAATTTTTTGTCAAACCAAGTTTACATCGGTGGCGACTCATACTCTGGCATTCCTATCCCAGTGATTGTTCAAGAAATTTCACAAGGAAATGAAAAAGGGGTACAGCCATGGATAAATCTCCAGCCATGGAAATTTGGATTTAAGATCTCTTGCAAACTACTAAAGTGCTCACTGCTTGACCATTTTGCAAGTACCTATGAGATGTATCCTTTAACAAAATCAAAGAAACCTTCCCCTGCTTTAGGATACTTGCTAGGCAATGCAGCTACTACTCAAAGGGAAAAAAATTATCAAATCCCCTTTGCTCATGGAATGGCACTTATTTCCGATGAACTATACCAGTCATTGCAAGAAAACTGTAAAGGAGAGTACATAAATGTAGACACCAGAAATGTATTATGTTCCAGAGATATCAAGTCGTTCAAAGAGGCTACATCAGGAATTAATTCGGCCCATATTTTGGAACCATCATGTGAGACTTTTGATACTGAAAAATCTCGGAGGAGATCACTAATTAAGAAATATCCCACAAATAATTCCCTAAATACTCATCTCAAATTGCCATCCTTGAGCTGTCGGAGTTATGTGTACTTCCTCTGCGAATTTTGGGCCAATGATGATAATGTTCGCAATGCACTCCATATCCGTCAGGGAAGTATAGAAAAATGGCGTCGCTGTACATTCGATATACCTCGCAAGATGGATATCCCAAGCAGTTATGATTATCATGTAAATCTCAGTAGATTAGGCTATCGTTCCCTCATATACAGTGGCGATCATGACTTCGTGGTTCCTTTCTTGGCAACTCAAGCATGGATAAGATCTTTAAACTACTCCATTGTCGATGATTGGAGGCAATGGAATACAAATGGCCAAGTTGCAGGGCAAGTCTTTGTTCTCCTTGCTGCTCTTGTAGGCCAGATTCCATTTGAGTATATTCTAGATAGGGTGGAGGGCACACAGCTCCAGAGTACAAGCCTGAAGAATGCCTTGCCATGTACAGTAGATGGCTATCTAACAGGGCTCTTTTTGTGCCAGATACTGAACAAGCTACGACCTGGTATTGTGAATGTGATTAGTGAACCTGATAATTCTCTGCCATCACAATCAGAAAATGTTAAATCGTTTCTGAAAGCTTTGGACGCAGTAGGATTGCCCCGGTTTGAAATATCAGACCTAGAAAAGGGGTCTATGAAAGCTGATATGGTGAAGGATGCAATGGGGTCAAGAGGTCGTAACGAAGGGTGTGAGGATGCAACGGAAGATGTGATGGGATCGTAA	1698	0.4217	MNHIDHPNALKTSLKPGQYVGVGESEDVQAFYYFIESEKNPKEDPLMLWLTGGPGCSALSGLVFEIGPLGFKNEEYNGSLPKLVLRPHSWTKVSSIIFVDLPVFTGFTYPTTDSAAQRSDWKLVHQVHQFLRKWLIDHPNFLSNQVYIGGDSYSGIPIPVIVQEISQGNEKGVQPWINLQPWKFGFKISCKLLKCSLLDHFASTYEMYPLTKSKKPSPALGYLLGNAATTQREKNYQIPFAHGMALISDELYQSLQENCKGEYINVDTRNVLCSRDIKSFKEATSGINSAHILEPSCETFDTEKSRRRSLIKKYPTNNSLNTHLKLPSLSCRSYVYFLCEFWANDDNVRNALHIRQGSIEKWRRCTFDIPRKMDIPSSYDYHVNLSRLGYRSLIYSGDHDFVVPFLATQAWIRSLNYSIVDDWRQWNTNGQVAGQVFVLLAALVGQIPFEYILDRVEGTQLQSTSLKNALPCTVDGYLTGLFLCQILNKLRPGIVNVISEPDNSLPSQSENVKSFLKALDAVGLPRFEISDLEKGSMKADMVKDAMGSRGRNEGCEDATEDVMGS	565

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst6g00982	565	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	18	430	IPR001563	GO:0004185\|GO:0006508
	Spst6g00982	565	Gene3D	-	468	543	IPR036872	-
	Spst6g00982	565	SUPERFAMILY	Calponin-homology domain, CH-domain	479	537	IPR036872	-
	Spst6g00982	565	MobiDBLite	consensus disorder prediction	543	565	-	-
	Spst6g00982	565	Gene3D	alpha/beta hydrolase	11	438	IPR029058	-
	Spst6g00982	565	Pfam	Serine carboxypeptidase	221	436	IPR001563	GO:0004185\|GO:0006508
	Spst6g00982	565	Pfam	Serine carboxypeptidase	19	180	IPR001563	GO:0004185\|GO:0006508
	Spst6g00982	565	Pfam	Calponin homology (CH) domain	479	536	IPR001715	GO:0005515
	Spst6g00982	565	SUPERFAMILY	alpha/beta-Hydrolases	19	437	IPR029058	-
	Spst6g00982	565	PRINTS	Carboxypeptidase C serine protease (S10) family signature	86	98	IPR001563	GO:0004185\|GO:0006508
	Spst6g00982	565	PRINTS	Carboxypeptidase C serine protease (S10) family signature	99	109	IPR001563	GO:0004185\|GO:0006508
	Spst6g00982	565	PRINTS	Carboxypeptidase C serine protease (S10) family signature	134	159	IPR001563	GO:0004185\|GO:0006508
	Spst6g00982	565	MobiDBLite	consensus disorder prediction	543	558	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst6g00982	Spst-Chr6	9030504	9039170	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst6g00982	338	434	Calmodulin-binding Proteins	AT2G22960	63.918	4.64e-37	134

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst6g00982	K16296		-	gmx:100792006	662.144