Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00980 ATGACACACAACACCGATGTGCCACCTTCTTCTACGACTTCTCAACATCATGAGAAAGACAAAGCCAACCAGAAGGTCCCCTTCTACAAGCTCTTCACTTTTGCAGATCGTTTTGACGTCGCCTTGATGCTCATTGGCACGATCTGTGCCATGGCCAATGGCTGGTCGCAGCCTATCATGACTATCATTTTAGGAAAGCTTATCAACACCTTTGGCTCCACCGATCCATCTAGTAGCATCAAGGAAGTTTCTAAGGTTTCACTATTATTTGTATACCTGGCTATTGCTACTGGAATTGCCTCGTTTCTTCAGGTTGCATGTTGGATGGTGACAGGAGAAAGACAGGCTGCGAGGATCCGCGGCCTGTACTTGAAAACTATATTGAAGCAGGACATTGCTTTCTTTGATACTGAGACAACAACTGGAGAGGTAATTGGTAGAATGTCTGGTGATACCATTCTCATTCAAGATTCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTGCTTCAACTTTTATTGGTGGCTTTGTGATTGCCTTTATAAGAGGATGGCGTCTCGCTATTGTTTTGCTCTCATGTATACCATGTGTTGTTGTTACTGGTGGAATTTTGTCCATGTTGATGTCTAAAATGTCAAGTCGTGGGCAAGCTGCTTACGCGGAAGCAGGAACTGTTGTAGAACAAACAGTGGGAGCGATAAGAACAGTGGCTTCTTTCACTGGCGAGAGAAAAGCAATAGAAAATTATAATACCAAGTTAAAGGTTGCTTATAAAACTATGGTTCAACAAGGGATGGCCTCGGGGTTAGGACTGGGAATACTTTTGTTGATTATCTTCTGCACTTATGCACTTGCCATGTGGTATGGTTCAAAACTCGTCATTGAGAAAGGATACAATGGTGGAACCGTCATCACTATAATAGTAGCCCTGATGACTGGTGGAATGTCACTTGGTCAAACATCCCCAAGCCTTAATGCATTTGCTGCAGGCCAAGCAGCAGCATATAAAATGTTTGAGACAATTAAAAGAAAGCCAAAAATTGATGCCTATGACACCAATGGTGTTGTCAAGGAAGACATAAGGGGAGATATTGAACTCAGAGATGTTTACTTTAGCTACCCTGCAAGGAAAAATGTGCAGATCTTCTCTGGATTCTCACTAAATGTTCCTAGTGGCACAACTGCCGCTTTAGTGGGTCAAAGTGGAAGTGGAAAATCTACCGTGATAAGTTTATTAGAAAGATTCTATGATCCTGATGCTGGAGAAGTATTAATAGATGGTGTGAATTTGAAGAATTTTCAGGTTAGATGGATAAGAGAACAGATTGGGCTGGTTAGTCAAGAACCTATCTTGTTTGCAGCTAGTATCAAAGAGAACATAGTCTATGGAAAAGAAGGTGCAACCGATGAGGAAATAAAATCAGCAATAACACTTGCTAATGCCAAAAAGTTCATTGACAAGCTGCCTCAGGGCCTTGAGACAATGGCAGGCCAGAATGGGACTCAACTCTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAGAATCCTTCTTCTTGATGAAGCCACTAGTGCATTGGATGCCGAGTCTGAACGTGTTGTTCAAGAAGCATTAGAACAAGCTATGTCAAAAAGGACCACTGTAGTTGTTGCACATCGCTTGACAACTATTAGAAATGCTGACACCATAGCAGTGGTTCATCAAGGAAAAATTGTGGAGGAAGGAACTCATGATGAGCTAGTCAAGGATGTTGATGGTGCTTATTCTCAGCTTATTCGCCTACAGGAAGGAGCTAAGGAAGCTGAAGGTAGCCATAATTCTGAAGCAGAGAATTCAAGTAACAATGTTAAATTAGATAGTCGCATAATTAGATCTTCCACCCAGAGAGAACTTTCAATAAGTAGAGGTTCATCACGTAGACACTCCCAGTCACATAGCTTTTCTCTTTCTCATCGAAGTGGGGTAGATGAATCTGTAGAAATAGAAGATGGGGATGATGAAAAAGGTAAAGTTGGTACTAAGAAGCCCATACAGGTTTCTTTGAGACGTTTGGCCTCCTTAAATAAGCCTGAAGTTCCAGTCTTAGTGCTTGGATCAATTGCTGCAATAATACATGGTCTTGTGTTCCCTATGTTTGGCTTACTGTTTTCCTCAGCAATATCAATGTTCTTTGAACCTCCAGAAAAACAACGGAAAGATTCTAGGTTCTGGGCACTTTTATATGTGGGTTTGGGTATAGTTACTCTTGTGGCCATACCTGTGCAAAATTACCTCTTTGGCATTGCTGGAGGAAAATTGGTAGAAAGAATTCGTTCACTGACATTTGAAAAGGTTGTACATCAAGAAATTAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTATCTACTGATGCTTCAACTGTGAAAAGTTTAGTTGGTGACACGTTGGCCCTCATTGTGCAAAACTTATCAACAATCATAGCTGGTCTAGTTATATCATTCACTGCTAATTGGATTCTTGCTTTCATTATTCTAGCTGTGTCACCCTTGGTCCTTATGCAAGGAGTTATTCAGATGAAGTTTCTTAAAGGATTCAGTGCAGATGCCAAGGTAAAGTATGAAGAGGCCAGTCAGGTAGCAAATGATGCTGTTGGTAGCATAAGAACCATCGCATCATTCTGTGCCGAATCGAAGGTGATGGATATGTACAGGAAGAAATGTTTAGAGCCGGAAAAACAAGGTGTTCGATTGGGGCTTGTGAGTGGTGCAGGATTTGGTTTCTCTTTTCTGGCTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGATCTGTTCTTGTGCAACATGGAAAAGCAACATTTTCAGAGGTTTTCAAGGTCTTCTTTTGTTTAACAATCACAGCAATCGGCATTTCCCAGTCTAGTTCCTTGGCACCAGACACCAACAAAGCCAAAGATTCCGCAGCTTCAATATTTAACATACTTGACAGTACACCTACCATTGACTCCAGCAGCAATGAGGGTACAACACTAGAAGCCATTGCTGGTGATATCAAACTTCAACATGTCAGTTTTTATTACCCAACTAGGCCTCATATTCAAATATTCAAAGATTTGTCTCTAAGCATTCCAGCCGGAAAGACTGTTGCCCTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTCATCAGCCTCTTAGAGAGATTTTACGACCCTCATACGGGACGAGTACTACTAGATGGAATGGATATAAAACAGTTCAGACTAAGCTGGTTGAGGCATCAAATGGGTTTGGTTGGTCAAGAACCTATTCTCTTCAATGAAAGCATTCGTGCCAACATAGCTTATGGCAAAGAGGGAGTTGCCACAGAGGAAGAGGTAAGTGCAGCCGCTAAGGCATCCAATGCACACCAATTCATATGTGCTCTTCCCGAAGGCTATGACACCTCTGTTGGAGAAAGAGGCACACAACTGTCAGGAGGACAAAAGCAGCGAATAGCCATTGCAAGAGCCATGCTGAAAGACCCCAGAATCCTCTTGCTTGATGAGGCAACCAGTGCACTTGATGCTGAGTCAGAGAAAGTAGTTCAAGAAGCTCTAGATAGAGTGAGTTTGAATAGAACTACTGTAGTAGTAGCTCACCGTCTTACAACAATTAGAGGTGCTGACATAATAGCTGTAACGAGAAATGGGGTGGTTGCTGAAAATGGAAGGCATGATGAGTTGATGAAGATTACTGATGGAGTCTATGCATCATTGGTTGCTCTACAGACGAGTGCATCATAA 3807 0.4198 MTHNTDVPPSSTTSQHHEKDKANQKVPFYKLFTFADRFDVALMLIGTICAMANGWSQPIMTIILGKLINTFGSTDPSSSIKEVSKVSLLFVYLAIATGIASFLQVACWMVTGERQAARIRGLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDSMGEKVGKFIQLASTFIGGFVIAFIRGWRLAIVLLSCIPCVVVTGGILSMLMSKMSSRGQAAYAEAGTVVEQTVGAIRTVASFTGERKAIENYNTKLKVAYKTMVQQGMASGLGLGILLLIIFCTYALAMWYGSKLVIEKGYNGGTVITIIVALMTGGMSLGQTSPSLNAFAAGQAAAYKMFETIKRKPKIDAYDTNGVVKEDIRGDIELRDVYFSYPARKNVQIFSGFSLNVPSGTTAALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNFQVRWIREQIGLVSQEPILFAASIKENIVYGKEGATDEEIKSAITLANAKKFIDKLPQGLETMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEQAMSKRTTVVVAHRLTTIRNADTIAVVHQGKIVEEGTHDELVKDVDGAYSQLIRLQEGAKEAEGSHNSEAENSSNNVKLDSRIIRSSTQRELSISRGSSRRHSQSHSFSLSHRSGVDESVEIEDGDDEKGKVGTKKPIQVSLRRLASLNKPEVPVLVLGSIAAIIHGLVFPMFGLLFSSAISMFFEPPEKQRKDSRFWALLYVGLGIVTLVAIPVQNYLFGIAGGKLVERIRSLTFEKVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNLSTIIAGLVISFTANWILAFIILAVSPLVLMQGVIQMKFLKGFSADAKVKYEEASQVANDAVGSIRTIASFCAESKVMDMYRKKCLEPEKQGVRLGLVSGAGFGFSFLALYCTNAFCFYIGSVLVQHGKATFSEVFKVFFCLTITAIGISQSSSLAPDTNKAKDSAASIFNILDSTPTIDSSSNEGTTLEAIAGDIKLQHVSFYYPTRPHIQIFKDLSLSIPAGKTVALVGESGSGKSTVISLLERFYDPHTGRVLLDGMDIKQFRLSWLRHQMGLVGQEPILFNESIRANIAYGKEGVATEEEVSAAAKASNAHQFICALPEGYDTSVGERGTQLSGGQKQRIAIARAMLKDPRILLLDEATSALDAESEKVVQEALDRVSLNRTTVVVAHRLTTIRGADIIAVTRNGVVAENGRHDELMKITDGVYASLVALQTSAS 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00980 1268 Gene3D ABC transporter type 1, transmembrane domain 30 630 IPR036640 GO:0005524|GO:0016020
Spst6g00980 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 603 IPR027417 -
Spst6g00980 1268 Gene3D - 1015 1265 IPR027417 -
Spst6g00980 1268 Gene3D - 355 604 IPR027417 -
Spst6g00980 1268 MobiDBLite consensus disorder prediction 615 661 - -
Spst6g00980 1268 MobiDBLite consensus disorder prediction 604 680 - -
Spst6g00980 1268 SMART AAA_5 1052 1245 IPR003593 GO:0016887
Spst6g00980 1268 SMART AAA_5 392 578 IPR003593 GO:0016887
Spst6g00980 1268 FunFam ABC transporter B family member 1 683 991 - -
Spst6g00980 1268 Pfam ABC transporter transmembrane region 704 975 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst6g00980 1268 Pfam ABC transporter transmembrane region 43 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst6g00980 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 44 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst6g00980 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 704 990 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst6g00980 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1015 1264 IPR027417 -
Spst6g00980 1268 SUPERFAMILY ABC transporter transmembrane region 30 349 IPR036640 GO:0005524|GO:0016020
Spst6g00980 1268 CDD ABC_6TM_Pgp_ABCB1_D1_like 43 326 - -
Spst6g00980 1268 FunFam ABC transporter B family member 1 355 604 - -
Spst6g00980 1268 FunFam ABC transporter B family member 1 1015 1265 - -
Spst6g00980 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Spst6g00980 1268 CDD ABC_MTABC3_MDL1_MDL2 365 603 - -
Spst6g00980 1268 PANTHER ABC TRANSPORTER B FAMILY 7 611 IPR039421 -
Spst6g00980 1268 FunFam ABC transporter B family member 9 30 361 - -
Spst6g00980 1268 Pfam ABC transporter 385 532 IPR003439 GO:0005524
Spst6g00980 1268 CDD ABC_6TM_Pgp_ABCB1_D2_like 693 1008 - -
Spst6g00980 1268 MobiDBLite consensus disorder prediction 1 21 - -
Spst6g00980 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1025 1262 IPR003439 GO:0005524
Spst6g00980 1268 Gene3D ABC transporter type 1, transmembrane domain 992 1266 IPR036640 GO:0005524|GO:0016020
Spst6g00980 1268 Gene3D ABC transporter type 1, transmembrane domain 684 991 IPR036640 GO:0005524|GO:0016020
Spst6g00980 1268 CDD ABC_MTABC3_MDL1_MDL2 1025 1264 - -
Spst6g00980 1268 ProSitePatterns ABC transporters family signature. 1165 1179 IPR017871 GO:0005524|GO:0016887
Spst6g00980 1268 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Spst6g00980 1268 Pfam ABC transporter 1044 1193 IPR003439 GO:0005524
Spst6g00980 1268 SUPERFAMILY ABC transporter transmembrane region 684 1006 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00980 Spst-Chr6 8994387 8999854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00980 1 1264 Calmodulin-binding Proteins AT2G36910 44.401 0.0 1059
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00980 K05658 - gmx:100801771 2076.98