Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00962 ATGGCTTTTCCAAACCCATCCATGTCAGTTTCTCCACAGCGGAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACAACCAATCGCCAAGTTACCTTCTGCAAACGCAGAAACGGCTTGCTCAAGAAAGCATATGAATTATCTGTGCTTTGTGATGCAGAGGTAGCTCTAATCGTCTTCTCTAGCCGTGGCCGTCTCTATGAATATGCTAATAACAGTGTGAAAGCTACTATTGAGAGGTACAAAAAAGCGTGTTCAGATTCGTCCGGTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGAAAAACTTCGTGCACAAATTAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAGTCTCTGGGCTCTTTGACTGCCAAGGATCTCAAAAACCTGGAGACAAAATTAGAAAAAGGAATTAGTAGGATTCGTTCAAAAAAGAATGAGCTGCTATTTGCTGAAATTGAGTACATGCAGAAGAGGGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAGCCACAGTATGGGTGTGTTGCCTGGAGGAACAAGCTATGACTCCATGCAGTCTCAGCAGCAATTTGACTCTCGTGGCTACTTCCAAGTGACTGGATTACAACCCAATAATCAGTATGCACGACAAGATCAGATGTCCCTTCAATTAGTGTAA 726 0.4394 MAFPNPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGAGSASEANAQFYQQEAEKLRAQISNLQNNNRQMMGESLGSLTAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERSHSMGVLPGGTSYDSMQSQQQFDSRGYFQVTGLQPNNQYARQDQMSLQLV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00962 241 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Spst6g00962 241 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Spst6g00962 241 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Spst6g00962 241 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Spst6g00962 241 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Spst6g00962 241 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Spst6g00962 241 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Spst6g00962 241 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Spst6g00962 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Spst6g00962 241 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst6g00962 241 Coils Coil 139 159 - -
Spst6g00962 241 Coils Coil 102 129 - -
Spst6g00962 241 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst6g00962 241 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Spst6g00962 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 199 - -
Spst6g00962 241 FunFam agamous-like MADS-box protein AGL11 28 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00962 Spst-Chr6 8793018 8800236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00962 14 241 MADS-box Gene Family AT3G58780 68.085 3.12e-109 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst6g00962 K-box 8.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00962 K09264 - gmx:732595 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00962 6 8793018 8800236 Spst6g00962 6 8793018 8800236 ECH
Spst3g01838 3 31906841 31907362 Spst6g00962 6 8793018 8800236 PCT