Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00947 ATGGCTGATATGAACCATGACGTGATTGTTAACGTGAACGGCGATTCCTCCAAAAGTTCTGATGACAAGGAAGCCTCTGTGCCCCTTTTGCAGAAGTTGGTGGCAGAGGTGGTGGGGACGTACTTGTTGATATTTGCAGGGTGTGCTTCGGTGGTGGTGAACCTTGGCAACGACAAGGTGGTGACACAACCTGGGATTTCAATTGTTTGGGGACTCGCCGTTATGGTTTTAGTTTACTCTGTTGGTCATATCTCTGGTGCTCATTTCAACCCTGCTGTCACCATTGCTCTTGCTTCCACGAGAAGGTTTCCTTTGAAGGAGGTGCCAGCGTACATAGCAGCGCAGGTTGCTGGAGCCACACTTGCGAGTGGGACTCTCAGACTTATATTCATAGGCAAAGAAGACCATTTTCCGGGAACACTCCCTTCAGGTTCTGATGTGCAAGCCTTTGTAGTCGAATTCTTGATGACTTTTTTTCTCATGTTCGTCGTCTCTGGAGTCGCCACCGATAAGAGAGCGATTGGTGAATTGGCAGGAGTTGCAATTGGGTCTACAGTACTGTTAAATGTGATGATATCCGGGCCAATCACTGGAGCATCAATGAATCCAGTACGGAGCTTAGGACCTGCTATTGTACATCGTGAGTATAGGGGAATATGGATATATATGGTGTCACCAATTCTTGGAGCTTTGGCTGGTACATGGGTCTACAATTTCATTAGGTACACTAACAAGCCTGTGCGTGAGATCAAGAGTGCCTCTTTCCTTCAAGTTCGCGAAGCTGAGTGA 789 0.474 MADMNHDVIVNVNGDSSKSSDDKEASVPLLQKLVAEVVGTYLLIFAGCASVVVNLGNDKVVTQPGISIVWGLAVMVLVYSVGHISGAHFNPAVTIALASTRRFPLKEVPAYIAAQVAGATLASGTLRLIFIGKEDHFPGTLPSGSDVQAFVVEFLMTFFLMFVVSGVATDKRAIGELAGVAIGSTVLLNVMISGPITGASMNPVRSLGPAIVHREYRGIWIYMVSPILGALAGTWVYNFIRYTNKPVREIKSASFLQVREAE 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00947 262 ProSitePatterns MIP family signature. 88 96 IPR022357 -
Spst6g00947 262 Pfam Major intrinsic protein 26 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00947 262 CDD MIP 31 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00947 262 NCBIfam MIP family channel protein 35 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00947 262 Gene3D Glycerol uptake facilitator protein. 3 252 IPR023271 -
Spst6g00947 262 PRINTS Major intrinsic protein family signature 70 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00947 262 PRINTS Major intrinsic protein family signature 152 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00947 262 PRINTS Major intrinsic protein family signature 220 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00947 262 PRINTS Major intrinsic protein family signature 107 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00947 262 PRINTS Major intrinsic protein family signature 183 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00947 262 PRINTS Major intrinsic protein family signature 31 50 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00947 262 PANTHER AQUAPORIN NIP2-1 19 250 IPR034294 -
Spst6g00947 262 SUPERFAMILY Aquaporin-like 27 249 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00947 Spst-Chr6 8652507 8653836 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00947 27 257 Major Intrinsic Protein MIP AT5G37820 59.914 7.41e-98 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00947 K09874 - gmx:100812577 405.986