Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00946 ATGTCGGTGGTGGCTGATAATTCGCCAAACAACGGAAACCACCATGTGGTTTTAAATGTAAACGGTGATACCTCCAAAAAGTGTGATAACCCAGCTAACCAAGATTGTGTACCTCTTCTGCAGAAGCTGGTAGCGGAGGTGGTGGGGACGTACTTTTTGATATTTGCAGGATGTGCTTCAGTGGTGGTGAACCTTGACAAAGACAAAGTAATTACACAACCTGGGATTTCAATTGTTTGGGGACTGACGGTTATGGTTTTGGTTTATTCTGTTGGCCATATATCTGGTGCTCATTTCAACCCTTCAGTCACTATTGCTCATGCTTCCACCAGAAGGTTTCCACTGAAGCAGGTACCAGCTTATGTGATAGCTCAGGTGGTTGGATCCACACTTGCTAGTGGAACTCTCAGACTTATATTTAATGGCAGGAACGACCATTTCGCAGGAACACTTCCCGCTGGTTCTGACTTGCAATCTTTTGTGGTCGAATTCATAATCACTTTTTATCTCATGTTTGTCATTTCTGGAGTTGCCACCGATAATAGAGCGATTGGTGAATTGGCTGGACTTGCAGTTGGGTCTACGGTACTGCTAAATGTGATGTTTGCAGGGCCAATCACAGGGGCATCAATGAATCCAGCAAGAAGCTTGGGACCAGCAATTGTGCACAATGAGTATAGAGGAATATGGATATATTTGGTGTCACCAACTCTTGGAGCTGTGGCTGGTGCATGGGCGTACAATTTTATAAGATACACAAATAAGTCAGTGCGGGAAATCACCAAGAGTGCCTCTTTCCTCAAAGGTGGTGAAGCCCACTTGATATGCGAAGAGGTTTACAGTTCAGGGGAAGAAATTGTGGGCACGTCATCTGATCCTCTCTCTGCCATCAAAATAACAAAAACAGAGTTATTCAAAACCTCATATCTCCTGTTTACAGATTTTGCATTTTGCATAGAGGAAAACTTTCTTGAGGACACAATTTCTTGGATACTTGGTCATGTTCATGTGACCGTCACTGCAAAAGCCAGAAACTTGGCCATTGGCCCCAAAAATAAGCCTAACTCCCATCTAGAATTAATGCCTGGAATGCTTTTCCCATCCCTTTCTGAATTTCCGTTCGGTAGGTTTAGACAAGATTTCAATGCTATTGTGAGATCATAA 1164 0.433 MSVVADNSPNNGNHHVVLNVNGDTSKKCDNPANQDCVPLLQKLVAEVVGTYFLIFAGCASVVVNLDKDKVITQPGISIVWGLTVMVLVYSVGHISGAHFNPSVTIAHASTRRFPLKQVPAYVIAQVVGSTLASGTLRLIFNGRNDHFAGTLPAGSDLQSFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHNEYRGIWIYLVSPTLGAVAGAWAYNFIRYTNKSVREITKSASFLKGGEAHLICEEVYSSGEEIVGTSSDPLSAIKITKTELFKTSYLLFTDFAFCIEENFLEDTISWILGHVHVTVTAKARNLAIGPKNKPNSHLELMPGMLFPSLSEFPFGRFRQDFNAIVRS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00946 387 PANTHER AQUAPORIN NIP2-1 24 267 IPR034294 -
Spst6g00946 387 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00946 387 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00946 387 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00946 387 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00946 387 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00946 387 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00946 387 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00946 387 Gene3D Glycerol uptake facilitator protein. 5 264 IPR023271 -
Spst6g00946 387 NCBIfam MIP family channel protein 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00946 387 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst6g00946 387 SUPERFAMILY Aquaporin-like 37 260 IPR023271 -
Spst6g00946 387 ProSitePatterns MIP family signature. 98 106 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00946 Spst-Chr6 8646489 8652176 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00946 21 268 Major Intrinsic Protein MIP AT5G37820 60.081 9.70e-101 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00946 K09874 - gmx:100786924 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00946 6 8646489 8652176 Spst6g00946 6 8646489 8652176 ECH