Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00937 ATGATGGAGGAGGCTCAGGGCAATTCTAGTTCCTTGCCTCCTTTCCTCGGCAAGACTTATGACATGGTGGATGATCCTTCCACCAATTCCATTGTTTCTTGGAGTGCCACCAATAAGAGTTTCATTGTTTGGAACCCACCAGAGTTTTCAAAGGATCTGTTACCCAGATTCTTTAAGCACAGTAACTTCTCCAGTTTTATCAGGCAGCTCAACACTTATGGGTTTAGAAAGATTGATCCTGAACTATGGGAATTTGCAAATGAGGGTTTTGTAAGGGGTCAGCCACATCTTTTGAAGAATATTCATAGGCGCAAACCTGTTCATAGTCATTCTTTGCAGAATATTCAGGTTCAAGGGACTTCTCCACTGACTGAATCAGAGAGGCAGAGTTTCAAGGATGAGATACAGAAGCTTAAAAATGAGAAAGAACAACTTCTTCGGGAGTTAGAGAGGCATGAACAAGACTGGAAAATGTATGAGGTACAATTACAATACTCTAATGATCGATTGGAACAGTTGGAAAAGAAGCAAGAAAATTTGGTTTATTCTGTTTCTGAAGTGCTGCAAAAACCTGGGATTGCCTTAAATCTGTTGCCACTGACAGAGAAAGGGGATAGAAAACGGAGGTTGCCAAGAAGTGGTCTCTTAAGTGATGACGCTAGCATTGAAGATCATCAAATGGAAACTTCCTCTGTATTACCTGGAGCAAACACAGAGGATACTTCTACTCTCACACCAAACATGGAGCGAATTGATCTGCTTGAGTCATCTATCATGTTTTGGGAGAATATTGCACATGATGTGCAAAGTCACGTGAGGATGGATTTTGATGATTCGACAAGTTGTGCTGATAGTCCAACTATATCTTCTGTGCAGCTAGAACTTGAAGTTCAACCTAAGTTAATTGGTATCAACGTAAACTCTGAGTCAGCTATAGCTACTGTTCCAAATCTTGATACATCCAAAGAACAACCAATGGAAACAGTTCCTGTGGTCACTGGTGTTAATGACATCTTCTGGGAACGATTCTTGACAGAGAATCCTGGTTCTGAAATTCATGAAGTACATTCTGAAAAGAAGGATTCGGATGGCAAAAGTAATGCCAAATTTTGGTGGAATATTAGGAATGTAAATAATCCTCCAGAACAGATGGGACATTCTTAG 1164 0.4038 MMEEAQGNSSSLPPFLGKTYDMVDDPSTNSIVSWSATNKSFIVWNPPEFSKDLLPRFFKHSNFSSFIRQLNTYGFRKIDPELWEFANEGFVRGQPHLLKNIHRRKPVHSHSLQNIQVQGTSPLTESERQSFKDEIQKLKNEKEQLLRELERHEQDWKMYEVQLQYSNDRLEQLEKKQENLVYSVSEVLQKPGIALNLLPLTEKGDRKRRLPRSGLLSDDASIEDHQMETSSVLPGANTEDTSTLTPNMERIDLLESSIMFWENIAHDVQSHVRMDFDDSTSCADSPTISSVQLELEVQPKLIGINVNSESAIATVPNLDTSKEQPMETVPVVTGVNDIFWERFLTENPGSEIHEVHSEKKDSDGKSNAKFWWNIRNVNNPPEQMGHS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00937 387 Coils Coil 128 162 - -
Spst6g00937 387 Gene3D - 7 105 IPR036388 -
Spst6g00937 387 FunFam Heat shock transcription factor 1 8 105 - -
Spst6g00937 387 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
Spst6g00937 387 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 223 IPR027725 -
Spst6g00937 387 MobiDBLite consensus disorder prediction 226 244 - -
Spst6g00937 387 MobiDBLite consensus disorder prediction 209 225 - -
Spst6g00937 387 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst6g00937 387 MobiDBLite consensus disorder prediction 209 244 - -
Spst6g00937 387 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst6g00937 387 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst6g00937 387 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst6g00937 387 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst6g00937 387 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00937 Spst-Chr6 8584466 8585752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00937 8 386 HSF AT4G18880 49.136 1.65e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst6g00937 HSF_DNA-bind 6.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00937 K09419 - gmx:100820566 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00937 6 8584466 8585752 Spst6g00937 6 8584466 8585752 ECH