Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00915 ATGGGAGCAGTGAGTGATGGAAACCGCAGCAGAAAGAAGTCATCATCAAGAGGGCACCACAGGTTTGTGGGGGTTCGACAAAGGCCATCAGGGAGATGGGTGGCAGAGATCAAAGACTCTCTAAAGAAGGTTAGGCTTTGGCTTGGAACATTTGACACTGCTGAGGATGCAGCTAGGGCATATGACAATGCTGCTCGAGCCTTGAGAGGTGCCAATGCTAGAACCAACTTCGAATTGCCTGAGACAGCAACGTCTGATGGTGCTTCTGAGCGCGGTGGCGGTGATGGTGGTTCAACCTTTGTGCCTGATTGCACTGAACCCTTTTCTTTTGAGGATGTCAATGACCCAGGCACAGAAGCTGAAGGCCTTCTTGGAGCACTTAAGGCCAAGCTGCTTGATGGAAAGAAAGGCAAGTTTCAGTTTCCATTTCTTCATAATGCTGCTGCCCCGGTCGTTCAATCTGGCTTGATTTCAAGATCAACTCAGAATATTTGTTATGGGGAGAAAGATTTATTAGTACCATCATCAGCTTATAACACATTCCTCTCAAGGATGAATGGAACTGGAGCCAACCCTGTGCTTGGTGTAACAAGCACTTTAGCAACATCAAACACTTGTGCTAAGAGTGTGGTTATCCCAACTCATGATCACGAAGATGGTGTGGCAAGCAGTTCTAGAGTCAACTCTCATCAACTTTGTCAAACCCCGCCTGTGGCAACATGGTCCAATGAAGTGGCATATGAATTGCCTTGGCCTACACAATATATGAACCAAGTTCCTGATAATAATAGCCTTCTTGCATCCTCAGCCACCTTGGCATGGCCATTTTCTGGAGTAATGGAGTCCACTGTTGATATGGCATTCACAGATCAAGGGCCGTCAAGTAGCAACAAAAGCGGCCAAATGATGAATATGGGGAGCATGCAGTTGCCTTTAGTTGGTGGTGCAACTGAAGGGCTTTGGACATTAGAGCAGCAACAATTTGTATGTGAGAACAACAATTGGTTTGGTTATAATGGCTCTTGGGATCCTCTCCTCTATGTTCCCTCTGAGCTAGCTTGA 1062 0.4661 MGAVSDGNRSRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLKKVRLWLGTFDTAEDAARAYDNAARALRGANARTNFELPETATSDGASERGGGDGGSTFVPDCTEPFSFEDVNDPGTEAEGLLGALKAKLLDGKKGKFQFPFLHNAAAPVVQSGLISRSTQNICYGEKDLLVPSSAYNTFLSRMNGTGANPVLGVTSTLATSNTCAKSVVIPTHDHEDGVASSSRVNSHQLCQTPPVATWSNEVAYELPWPTQYMNQVPDNNSLLASSATLAWPFSGVMESTVDMAFTDQGPSSSNKSGQMMNMGSMQLPLVGGATEGLWTLEQQQFVCENNNWFGYNGSWDPLLYVPSELA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00915 353 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Spst6g00915 353 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 110 - -
Spst6g00915 353 FunFam ethylene-responsive transcription factor RAP2-11 20 79 - -
Spst6g00915 353 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Spst6g00915 353 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Spst6g00915 353 MobiDBLite consensus disorder prediction 76 98 - -
Spst6g00915 353 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Spst6g00915 353 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Spst6g00915 353 SUPERFAMILY DNA-binding domain 22 78 IPR016177 GO:0003677
Spst6g00915 353 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Spst6g00915 353 MobiDBLite consensus disorder prediction 1 25 - -
Spst6g00915 353 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00915 Spst-Chr6 8381987 8383048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00915 9 77 AP2-EREBP Transcription Factor Family AT5G19790 65.714 5.02e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst6g00915 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00915 - - gmx:102661478 514.612