Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00907 ATGCTAGGATTTGAAAGACCTGGTGAACCTTCTCAGCTTGCTACTCTGGATATCGTTTGTAATGTGTCATATGGTGTTGTAATGCATACATTTGAGTCCCTTGTGGAGACAGCTGACTCTTCAAAAAAGTGGCAGCAGAGTGGTGTCACTATTGGATCGAAGAGTTTCATCCTGTTTATTCGTTATGTTGGAAGGATTCCGGAAGATGTTGTGTTAACATCACTTCACTGTGGGTGGCTAAGGGACCACTCCTTGGAAAGCTTTTCTTTGCCTTCTTTGAGATTTGCTGGTCGGTGTGCGAGGCATTGTTATTCCGTGCTTAGTGCTAGTTGTTGCCCTGTTACCAAGAGGGAAGTGAAGGAAAACTGGAAGAGTTGGAAATGGAGATCTTCCAAGGACTTATTTTTAAATGATGCTTATTTTGTACCATCTGGATTTAGAAGTTGTGCTCCAAATTACTCACCTTCTCAATCTTTAAGTGCTGCTCCAGCATACATGGTACCTGCAATAACTCTCAATGCAGGTCCCATAAATTGTATTGTTTGGAGAATATGTTAG 558 0.4176 MLGFERPGEPSQLATLDIVCNVSYGVVMHTFESLVETADSSKKWQQSGVTIGSKSFILFIRYVGRIPEDVVLTSLHCGWLRDHSLESFSLPSLRFAGRCARHCYSVLSASCCPVTKREVKENWKSWKWRSSKDLFLNDAYFVPSGFRSCAPNYSPSQSLSAAPAYMVPAITLNAGPINCIVWRIC 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00907 185 Gene3D - 103 178 IPR012334 -
Spst6g00907 185 PANTHER PECTATE LYASE 18-RELATED 114 180 IPR045032 GO:0030570
Spst6g00907 185 SUPERFAMILY Pectin lyase-like 118 182 IPR011050 -
Spst6g00907 185 PRINTS Pollen allergen Amb family signature 126 150 IPR018082 -
Spst6g00907 185 PRINTS Pollen allergen Amb family signature 156 179 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00907 Spst-Chr6 8347749 8350070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00907 114 179 Polysaccharide Lyase AT4G22080 56.061 6.56e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00907 K01728 - gmx:100807483 135.191