Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00906 ATGGATCAAAACAGAAGCGAAGAGAGAGGTGAGATACCGGGTCCGGTTCATGAATGGGTATATGGGAATTTGAGTCATTTTGTTGAAGGGGTAGTTATTGATGCAGTAGATGGGAACAACATGGGCGGCAGAGTTGGTATAAGTGGAGAAGCTGGAACTTCAGGAGAGGTAGGTAAGGATTTAGTACCTGATAAGGAGCTAAAGGAGGGGCTTCAGGAAGTTAAGGGTCAGGACAAGCACGATCAAGAAAATATCAGTGATAATGAATTGCTTGGGGTTGATCAGGGAACTTGCTATAAGTCAAACCATTTGGTTAATCAGGAAGTGATTGAAACTGTGGTTGTAATTGATTCTTTTGAGACTGAGTATGTCAATGGGGATATTAGGAAATTGGAAGCAAAAGTTAATGAATCAGGGTTGAACTTGGCATCCATGAAAGCACCAGAAGGGGCGTCTGAAACTGATCATTCATGTGTGATTGATATAAATTGCAGAAGCCGCAAAAAGGTTTGCGAGAATTCTGAAGGTGAACTGATTTGTAGGATTTGCCATCTGGCTTCGATGCAGCCATCGGATGAAAGTGAAACAACTGTTGGCCCTGCTAGTAGTGCTACGAATCCAGATTTGATTCATCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCACATGTTCATTGTGCTGAAGCGTGGTTCAGACTTAAGGGGACCAGGTTATGTGAAATATGTGGTGAGACTGCGGCAAATGTTTTGGGTGTTACTAATTATGGATTTATGGAAAAGTGGAATGAAAGAAGGTTCAGGGACGACGGTGGCAACTCATCCCGCAGGTTTGGTGGATGCTGGCGAGGACAGCCATTTTGTAATTTCTTGATGGCATGCCTGGTAATTGCATTTGTTCTGCCATGGTTTTTTCATGTAAATATGTTCTAG 933 0.4277 MDQNRSEERGEIPGPVHEWVYGNLSHFVEGVVIDAVDGNNMGGRVGISGEAGTSGEVGKDLVPDKELKEGLQEVKGQDKHDQENISDNELLGVDQGTCYKSNHLVNQEVIETVVVIDSFETEYVNGDIRKLEAKVNESGLNLASMKAPEGASETDHSCVIDINCRSRKKVCENSEGELICRICHLASMQPSDESETTVGPASSATNPDLIHLGCACKDELGIAHVHCAEAWFRLKGTRLCEICGETAANVLGVTNYGFMEKWNERRFRDDGGNSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFHVNMF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00906 310 ProSiteProfiles Zinc finger RING-CH-type profile. 172 250 IPR011016 GO:0008270
Spst6g00906 310 Pfam RING-variant domain 180 243 IPR011016 GO:0008270
Spst6g00906 310 SMART ringv_2 179 244 IPR011016 GO:0008270
Spst6g00906 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 252 IPR013083 -
Spst6g00906 310 PANTHER ZINC FINGER, RING-CH-TYPE 79 310 - -
Spst6g00906 310 SUPERFAMILY RING/U-box 175 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00906 Spst-Chr6 8338992 8341994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00906 160 309 C3H Transcription Factor Family AT5G05830 38.608 4.25e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00906 - - vra:106775190 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00906 6 8338992 8341994 Spst6g00906 6 8338992 8341994 ECH
Spst3g01764 3 23712282 23714936 Spst6g00906 6 8338992 8341994 PCT