Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00900 ATGAAGCTCTTTCCCACTTTCTTCATTCTCCTTTTGCTGGTTGTTCTCGTGGAATCTAAATATTCATGCAAAAATGAAGACCAGGAGCTGGTGTCAAAGGCGTTTCAATCTGTGTCTGGATTCTACTCTTCCTGGTTCCAAAGCGGTTCTAATTGTTCAAATGCTGATACTATTAAAGGGCTAAATTTTTCGTCCAAAAACCTAAGTGGAAGCATATCGTGGAAGTATCTGCGGAACATGTCCAAGTTGGAGGTTCTAGATTTGTCTGGGAATTTTCTACAAGGGCAGGTACCAAACTGGTTGTGGACAAGCTCAACCTTATTGGTAGTGAATCTTTCCAACAACAGGTTCGGAGGGAGCATTAACCCCACTACCCAAAATGGTTCCTTTTCATCTCTGCAAAGTCTCAATCTCTCACACAACAGGTTCACCAACCAGCTTCACCTCTCTGGTTTTTCAAATCTTAAAAGCATCGACCTTTCGCACAACAACCTCAGAACTTTACCTTCGGGGTTCCAAAACCTCACCAATCTCCACCACCTCAATCTCTCCAACTGCAACATCAAAGGAAGCGTAAAGTCCATTTCTTCCCTAACCTCACTATCCTTCTTGGACCTTTCAAACAACTCTTTAAACGGTAGCTTCCCCTCCGATTTCCCTCCCCTGAATACCATCAAATTCTTGAACATCTCCCACAACAACTTCAAAGCATCGACCACCTTAGACAGGTTCAAAAAGTTCGGGAAATCAGCGTTCATTCACGCTGGCAACAACTTCAGCTACAACGTATCCAAAACGCCAAAGCTAGGTTCATCTTCAACCCCACCACATGAACAGGCCCACCACATTCACGCGGAGAAGAAGAGGCGGAAGGTAAAACAAAAGTCAAAACAGAAAACGAGAAGCATGATTGCCGCCCTGTCATGTGCCTCCGCACTCTTGGTTGTCGGGTTGTGCATGTGCGTGGTGTGGCGTTGCAGAAGGAAGAGTCAATTGGCGAAAAGGAACAAGTGGGCGATCTCGAAGCCGGTCCCAGTGAGCATGAAGATGGAGAAATCGGGACCGTTCGCGTTCGAGACAGAGTCAGGGACATCCTGGGTGGCTGACCTGAAAGAACCCTCTTCCGCACCCGTCGTCATGTTCGAGAAGCCCCTCATGAACCTCACCTTCGTGGACCTCATCGCCGCCACGTCACACTTCGGCAAAGACTCTCTCCTGGCTGAGGGCAGGTGTGGGCCCGTGTACCACGCTGTCTTAACGGGAGACATCCACGTGGCAATCAAACTCCTCGAAAACGCCAGAGACGTCGTTCATGATGACGCTGTCGCTCTCTTCGTTGACCTTTCCCAACTCAAACACCCCAATCTCTTACCCCTCTCCGGTTACTGTATTGCAGGGAAGGAGAAGCTGGTGTTGTACGAGTTTATGTCGAACGGGGATTTGGGTAGGTGGTTGCAGGAGCTACCAGCGGGGGAGACTAACGTGGAGGATTGGAGTGGTGACACGTGGGACATTATTCAAAATGGCGCCGTTTCTCGAGCCTCGCCCCCGGAAAAGATGGGCTGGCCAACACGCCACCGTATCGCGGTGGGCGTGGCGCGTGGATTGGCGTTTCTGCACCACGCGGGCTCCAGGCCTGTCGTGCACGGTCATTTCGTCACCTCCAACGTGCTTCTCGGCGACGACTTCGAGCCGCGAATCGCGGATTTCGGTTTCCGGAAGTTCGGGAGGGAGAACAACGCCGCGGCGGCGGCGAATTGTTCGACGGAGACGGATGTTTACTGCTTCGGTGTGGTGCTGATGGAGCTTCTGACGGGGAGGAGCGGCACGGCGGAGACGGTGGTTTGGGTGAGGAAGGCAGTGAGGGAGGGACACGCGGTGAGGGCGTTGGATGAGAGGCTCAAACTCGGCGGCGGCGACTCGGAGAGTGAGATGGTGGAGAGCCTCCGAGTGGCGTATTTGTGTACGGCCGAGTCGCAGGCGAAGAGGCCCACCATGCAGCAGGTGTTGGGCCTGCTCAAAGATATTCACCCGAGCCACGGACTCGAGTGA 2052 0.5239 MKLFPTFFILLLLVVLVESKYSCKNEDQELVSKAFQSVSGFYSSWFQSGSNCSNADTIKGLNFSSKNLSGSISWKYLRNMSKLEVLDLSGNFLQGQVPNWLWTSSTLLVVNLSNNRFGGSINPTTQNGSFSSLQSLNLSHNRFTNQLHLSGFSNLKSIDLSHNNLRTLPSGFQNLTNLHHLNLSNCNIKGSVKSISSLTSLSFLDLSNNSLNGSFPSDFPPLNTIKFLNISHNNFKASTTLDRFKKFGKSAFIHAGNNFSYNVSKTPKLGSSSTPPHEQAHHIHAEKKRRKVKQKSKQKTRSMIAALSCASALLVVGLCMCVVWRCRRKSQLAKRNKWAISKPVPVSMKMEKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLMNLTFVDLIAATSHFGKDSLLAEGRCGPVYHAVLTGDIHVAIKLLENARDVVHDDAVALFVDLSQLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLQELPAGETNVEDWSGDTWDIIQNGAVSRASPPEKMGWPTRHRIAVGVARGLAFLHHAGSRPVVHGHFVTSNVLLGDDFEPRIADFGFRKFGRENNAAAAANCSTETDVYCFGVVLMELLTGRSGTAETVVWVRKAVREGHAVRALDERLKLGGGDSESEMVESLRVAYLCTAESQAKRPTMQQVLGLLKDIHPSHGLE 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00900 683 ProSiteProfiles Leucine-rich repeat profile. 154 176 IPR001611 GO:0005515
Spst6g00900 683 PRINTS Leucine-rich repeat signature 198 211 - -
Spst6g00900 683 PRINTS Leucine-rich repeat signature 155 168 - -
Spst6g00900 683 ProSiteProfiles Leucine-rich repeat profile. 177 199 IPR001611 GO:0005515
Spst6g00900 683 MobiDBLite consensus disorder prediction 267 297 - -
Spst6g00900 683 Gene3D Ribonuclease Inhibitor 125 309 IPR032675 -
Spst6g00900 683 Gene3D Ribonuclease Inhibitor 15 124 IPR032675 -
Spst6g00900 683 SUPERFAMILY L domain-like 53 238 - -
Spst6g00900 683 SUPERFAMILY Protein kinase-like (PK-like) 377 673 IPR011009 -
Spst6g00900 683 Gene3D Transferase(Phosphotransferase) domain 1 504 681 - -
Spst6g00900 683 MobiDBLite consensus disorder prediction 283 297 - -
Spst6g00900 683 Pfam Leucine rich repeat 132 188 IPR001611 GO:0005515
Spst6g00900 683 Pfam Protein tyrosine and serine/threonine kinase 404 670 IPR001245 GO:0004672|GO:0006468
Spst6g00900 683 Gene3D Phosphorylase Kinase; domain 1 360 475 - -
Spst6g00900 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 50 676 - -
Spst6g00900 683 ProSiteProfiles Protein kinase domain profile. 400 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00900 683 FunFam Putative LRR receptor-like serine/threonine-protein kinase 361 475 - -
Spst6g00900 683 Pfam Leucine Rich Repeat 82 100 IPR001611 GO:0005515
Spst6g00900 683 SMART LRR_typ_2 80 104 IPR003591 -
Spst6g00900 683 SMART LRR_typ_2 198 221 IPR003591 -
Spst6g00900 683 SMART LRR_typ_2 152 174 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00900 Spst-Chr6 8284381 8286712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00900 61 676 Receptor kinase-like Gene Family AT5G07280 31.250 7.52e-72 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Spst6g00900 PK_Tyr_Ser-Thr 3.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00900 - - gmx:100778920 1141.33