Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00891 ATGTCAGAAGGATATGAGATTCATAACAATGAGGAAACTTCATCCGGATGTTCCCAGAAATGCTCTTCATTTGACTTGAATGCTGAAGCTTGCAGTGAAGATAACACTAACAGTGATACAGAAGAGGAGCTCACAACTAAGGAGAACAATATTGAGAAAGCAAAGGATGAGGGAACCTCAGCAAATGGAAGTAGCATTTCAAGAGAAGGAAATGAGAGAAGAGGAACGGTGAGACAATATGTTAGATCCAAGATGCCTCGGCTTCGGTGGACTCCTGAACTTCACCGTTCATTTGTGCATGCTGTTGAAAGACTTGGTGGTCAAGAGAGAGCAACACCCAAGTTGGTGCTTCAACTAATGAATGTGCGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGGTAGCACAGATTGAAATGTATCGAAGCAAGAAACTTGACGAGGTTGGGCAAGTACTAAATAGGTCCAACCAAAGATCTGTGATACTCCATCCGTATTCCATGAGTCCTCAACAACATCTTAAGATGGGAAATGGTGGAATCATTCTGGCAACTCATCTCAACAAACATAGTCATTTCCCAAGACTCCTCCAGACCCCCTTCTCCTTTTCACATTCCCGTACAAATGACACCGATTCAAGGCACCAGCAATGGTACATCAATCATCAACCTTTTAAAATACCAATAGCTTCGGGCCAAATTCAATCAAAGGATACACATATGAAACCAAGCCAATTGCTTGAAGAGAAAATGTGGGCTCCCATAGAAATTATAAACAATCATCAATCCAAGTTCCAAAAGTTACCTGTCATTCTTGCACCGAAGAATGGATTACGAGCTGTTCAGACAGCTGAATGGAGTTTTCTGAACAACACAAGCATCACAGAACATCTATCAAACAAATTCAATGAACCTCGCAACTATTCCAACAGTTTAAAGCAAGAATTTGATCCCCCATTTCGGATTAAGAAAGACGAACAACAATTGCCTGAATTGCAACTGAGTTTGAGTCAAACAATTGGAAGTCATGGCAGCAAGATGGATCATTATAAAGAAACCCAAGAAATCAGCACTACACTTTCCCTTTCGTAA 1095 0.4119 MSEGYEIHNNEETSSGCSQKCSSFDLNAEACSEDNTNSDTEEELTTKENNIEKAKDEGTSANGSSISREGNERRGTVRQYVRSKMPRLRWTPELHRSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQVAQIEMYRSKKLDEVGQVLNRSNQRSVILHPYSMSPQQHLKMGNGGIILATHLNKHSHFPRLLQTPFSFSHSRTNDTDSRHQQWYINHQPFKIPIASGQIQSKDTHMKPSQLLEEKMWAPIEIINNHQSKFQKLPVILAPKNGLRAVQTAEWSFLNNTSITEHLSNKFNEPRNYSNSLKQEFDPPFRIKKDEQQLPELQLSLSQTIGSHGSKMDHYKETQEISTTLSLS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00891 364 NCBIfam myb-like DNA-binding domain, SHAQKYF class 86 136 IPR006447 GO:0003677
Spst6g00891 364 Coils Coil 37 57 - -
Spst6g00891 364 Gene3D - 85 147 - -
Spst6g00891 364 MobiDBLite consensus disorder prediction 40 55 - -
Spst6g00891 364 MobiDBLite consensus disorder prediction 29 79 - -
Spst6g00891 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 60 210 IPR046955 GO:0003700
Spst6g00891 364 SUPERFAMILY Homeodomain-like 84 136 IPR009057 -
Spst6g00891 364 MobiDBLite consensus disorder prediction 56 70 - -
Spst6g00891 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 147 IPR017930 -
Spst6g00891 364 MobiDBLite consensus disorder prediction 341 364 - -
Spst6g00891 364 Pfam Myb-like DNA-binding domain 88 136 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00891 Spst-Chr6 8198618 8201122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00891 77 148 G2-like Transcription Factor Family AT2G42660 75.000 1.23e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst6g00891 Myb_DNA-binding 4.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00891 - - vun:114187451 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00891 6 8198618 8201122 Spst6g00891 6 8198618 8201122 ECH
Spst6g00891 6 8198618 8201122 Spst3g01758 3 23584412 23588661 ECH
Spst3g01758 3 23584412 23588661 Spst6g00891 6 8198618 8201122 PCT