Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00880 ATGGCCGAGGAATCTCAAGGGATTAAACTGTTCGGGGCGATGATTAGACTGAACAGTGGAGAAGTAAAAAAAGGAGAGAAAGGAAGGGAATACGAGAGAGGGGAGAAGAGAACAGAAAAGATAATACCCTGCCCCAGATGCAAGAGCATGGAAACTAAATTCTGTTACTTTAATAATTACAACGTTAATCAACCAAGGCATTTTTGTAAGAGCTGCCAGAGATATTGGACTGCGGGTGGGGCCCTCCGAAACGTCGCCGTCGGAGCCGGCCGCCGGAAGGGAAAACCGCCGTGTCCTGGTGGCTGTGAGTTCCCGGATGGGCGTGTCTATGAAAGTTCGGAAGACGAGAACAAGTTTGAGATGGAACAGAGGTTGGTTTTGGACGAGGGTCACACCGATTTCCGGCAAATTTTTCCGGTGGCCAAGCGGCGGAGAACTCTCTCAGCTGAGCAGGAAGGTCAATGA 465 0.5011 MAEESQGIKLFGAMIRLNSGEVKKGEKGREYERGEKRTEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVAVGAGRRKGKPPCPGGCEFPDGRVYESSEDENKFEMEQRLVLDEGHTDFRQIFPVAKRRRTLSAEQEGQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00880 154 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Spst6g00880 154 PANTHER CYCLIC DOF FACTOR 2 28 95 IPR045174 GO:0003700|GO:0006355
Spst6g00880 154 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Spst6g00880 154 Pfam Dof domain, zinc finger 40 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00880 Spst-Chr6 8065440 8066617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00880 3 144 C2C2-Dof Transcription Factor Family AT1G29160 48.780 1.03e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst6g00880 zf-Dof 4.2e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00880 6 8065440 8066617 Spst6g00880 6 8065440 8066617 ECH