Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00876 ATGTCAACTCCTTCATCATCTTCATCTTCTTCATCTTCTTCTATTTGGGTGTTGTCTAACATAAAGCTTCAGTTCTTTGCCCGCATCAGACGGTTTCTCCAATCCAAAGCAACCAGAAAGCGTTTTGATCTCTCTGATCGGTTTGACACAGCTAAGAGCAGAGGTGAACACAACAACAAGATTGAAAAACTTGAAACAGTACAAGTTATGGAGAAGCACAAGGAGGAAGAGGGAGAGGAAGAGTCTGCGATCATGTTGAAGAGAACTGTGAAGATGCTTCACTTCGGAAGCTGGGAAGAGAAGGAAGTAGCAGCAAACGAAATTGAAAGGTTAGCCAAGGAAGATGTTAAGGTTAGAAAGTTGATAGCAGAACTTGGGGTGGTGCCGGTGTTGGTATCTATGGCGGCGTCACCAGTGGCTAGCCGCCTGCGAGCCGGGTTGACGGCGTTGATCCACCTAGCTGATGGAACTTACATGAACAAGGCTTTGATAGTGGAGGCAGGAATATTGTCCAAGCTGCCTAAGACAATTGACCTTGTAGATGAATCGACAACAAGTAAATTGGCAGAGTTGCTTTTGTCACTGTCATCTCTAGCAAATACTCAATTCCAATTCCCTCTTGCTTCATTAGACTTTCTCCCATTACTTAGACACATTCTTGAGACAGGCACATGTTTTGACACCAAACAATCGTGTTTGGGTGTTTTGTTTAACCTATCGACTGTGTTAGACAATGCATCCCCTATGGTTTCAAGTGGGGTGGTTCCTATCCTCTTGGAACTGTCCTCAGTAAAAGAAATTTCAGAGAGAGCACTTGCCACTCTAGGGAACTTGTCAGTGACTTTGATGGGAAAAAAAGCAATAGAGAACAGCACAATGGTACCAGAAACCTTTATTGAGATCTTGTCATGGGAAGATAGCCCTAAATGCCAAGAGTTTTCAGCTTATATTTTGATGATTTTAGCACATCAAAGCTCATTGCAAAGAAAGAAAATGGCACAGGCAGGGATTGTTCATGTGCTTCTTGAAGTGGTTTTATTGGGGAGCCCTTTGGCTCAAAAGAGAGCAATGAAACTCTTGCAATGGTTTAAGGATGAAAGGCAAACTAAGATGGGGCCACATTCTGGGCCACAAACACCAAGATTTGCAATGGGGTCACCGGTGAATCAAAGAGAAGCAAAAGAAGGGAAGAAAATGATGAAGAGTCTGGTGAAACAAAGTCTGCATAGGAATATGGAAATAATAACTCAGAGAGCAAACGCTGCAGGGGAGTCTTCTAAATTGAAGTCTTTGATTATTAGCACAAGTTCCAAGAGTTTGCCTTACTAA 1329 0.4274 MSTPSSSSSSSSSSIWVLSNIKLQFFARIRRFLQSKATRKRFDLSDRFDTAKSRGEHNNKIEKLETVQVMEKHKEEEGEEESAIMLKRTVKMLHFGSWEEKEVAANEIERLAKEDVKVRKLIAELGVVPVLVSMAASPVASRLRAGLTALIHLADGTYMNKALIVEAGILSKLPKTIDLVDESTTSKLAELLLSLSSLANTQFQFPLASLDFLPLLRHILETGTCFDTKQSCLGVLFNLSTVLDNASPMVSSGVVPILLELSSVKEISERALATLGNLSVTLMGKKAIENSTMVPETFIEILSWEDSPKCQEFSAYILMILAHQSSLQRKKMAQAGIVHVLLEVVLLGSPLAQKRAMKLLQWFKDERQTKMGPHSGPQTPRFAMGSPVNQREAKEGKKMMKSLVKQSLHRNMEIITQRANAAGESSKLKSLIISTSSKSLPY 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00876 442 Gene3D - 58 421 IPR011989 -
Spst6g00876 442 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 442 - -
Spst6g00876 442 MobiDBLite consensus disorder prediction 369 395 - -
Spst6g00876 442 SMART arm_5 242 280 IPR000225 GO:0005515
Spst6g00876 442 SMART arm_5 115 155 IPR000225 GO:0005515
Spst6g00876 442 SMART arm_5 157 197 IPR000225 GO:0005515
Spst6g00876 442 SMART arm_5 200 241 IPR000225 GO:0005515
Spst6g00876 442 SUPERFAMILY ARM repeat 90 363 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00876 Spst-Chr6 8038922 8041657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00876 35 372 U-box Gene Family AT2G23140 26.608 1.24e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00876 - - gmx:100813828 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00876 6 8038922 8041657 Spst6g00876 6 8038922 8041657 ECH