Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00851 ATGGGGTCTGAAGACAAACATGAGGAGGAATCACTTGGTATGGGCCTTAAGCTGATGCTAGCAGCAGCTCTCTCTTTATTTGGTATGATCTTAGTAATCATCATCTTCCATTTTAGTGCAAAATATTTCATTAGACGCCAACAAAGGAGACGCCAAAACGACCTTCTTTACCAGATCACCACTCAAATTGCACCAGTTGATTTGAGTTCTGTGGAGCCCCGCAACCCTGGCCTTGAAACTTCCATCGTAGCCTCTCTGCCTAAACTTTTGTACAAGCAAACGGACCAGTTTAAGAAAGGTGAAGTCATAGAGTGTTCCGTTTGCCTAGCCACTATTCTGGAGGATGCAGTCACTAGAGTGCTGCCAAATTGTAAGCACATTTTTCATGTTGATTGTGTTGATAAATGGTTTAATTCTAACACTACATGCCCAATTTGCCGCACTGTGGCTGACCCAAAGGTACAACCTGAAGAACGTGGTCATTTCCACCAAGTCCAACCCACAGCACCACCTGTTGTGGGTGGTGTTGAGCTCCGAGATGGTAATGAAATGGAAAAGGTGGGGTGCTCAGGTTTGAGAATAGGATCCTTCCATAGGATGGTTAGTAGCAGTGAAAGATCAGGGAGAAGGACCCAGAGTTGTGATGAATCTACCATAGATATTGAAAGACACTGA 675 0.4444 MGSEDKHEEESLGMGLKLMLAAALSLFGMILVIIIFHFSAKYFIRRQQRRRQNDLLYQITTQIAPVDLSSVEPRNPGLETSIVASLPKLLYKQTDQFKKGEVIECSVCLATILEDAVTRVLPNCKHIFHVDCVDKWFNSNTTCPICRTVADPKVQPEERGHFHQVQPTAPPVVGGVELRDGNEMEKVGCSGLRIGSFHRMVSSSERSGRRTQSCDESTIDIERH 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00851 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 158 - -
Spst6g00851 224 SUPERFAMILY RING/U-box 87 157 - -
Spst6g00851 224 SMART FANCL_C_2 101 148 - -
Spst6g00851 224 SMART ring_2 105 146 IPR001841 -
Spst6g00851 224 MobiDBLite consensus disorder prediction 200 224 - -
Spst6g00851 224 Pfam Ring finger domain 104 147 IPR001841 -
Spst6g00851 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Spst6g00851 224 MobiDBLite consensus disorder prediction 203 224 - -
Spst6g00851 224 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00851 Spst-Chr6 7778466 7779140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00851 11 224 C3H Transcription Factor Family AT2G42360 32.159 1.24e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00851 K19038 - gmx:100786701 347.821