Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00848 ATGGTGGATGCTGTGCACACTGCTTTGAGCAATATAGGGTTCGGGGACATTGAGATTGTGATTGCTGAGACAGGATGGCCCTCTCGTGGGGACACCAATGAAGTAGGAGCCACTGTTGAAAACGCCAGGGCCTACAATGGAAACCTCATTGCACACCTCAGATCAATGGTTGGCACTCCTTTCATGCCTGGAAAATCTGTGGACACGTTCATTTTTGCACTCTATGATGAGGATTTGAAACCTGGTCCAGCATCTGAGAGAGCATTTGGCCTGTACAAAGCTGATCTTACCATGGCATATGATGTTGGCCTAGACAAGTCTAGCTCTAACCATAAGAATCCACCAACTAGTCCTGAAAGGGAAACACAGTGGTGCATCCCAAAAGTGGAAGTGAGTGAGGCTCAATTGCAGACAAATATTGATTATATTTGTACTAGCCAAGTTATAGATTGTGGACCAATTCAACCAGGAGGTGCTTGTTATGAACCTAACACAGTATTATCTCATGCTGCCTTTGCCATGAATCTCTACTACCAAAAGGTTGGAAGAAATCCATGGAACTGTGATTTCTCTCAAACAGCAATGCTTACATCTCAAAATCCAATGGATATGAATCTTCTGTTTGTATCTGGTTGGAATACATGCCGCGTTGGATGGTTCAAAATCAACACTTCCTGCGCGCTCCGTCCAATCCTCGACTTCCAAAGCAGACACTTTCTTCCAAAGAAAAGTAGTGTAGACAATAAAGTTATATCTATTGGTGCAATCATTGATCGGAATTCTCGCATTGGGAAAGAACAGCAAGTAGCCATGGAGATTGCAGCTCGAAGTTACAATAGCACTTCAAAGACCTTTAAGTTGGCTATCTATTTTCGTAACTCCACCACTGATCCTCTCACAGCCATCAATCTTGCTGAAGAGATGATTAATAAGCAAAAGATGCAAGTGATTATAGGGATGCACAGATGGTCAGAAGCAGGTCTAGTTGCTGAAATAGGAAGCCAAGCTCAAGTTCCTATCATAGCATTTGCACAACCTACCATTACCCCACCGTTGATGGCTAAGCGATGGCCTTTTTTGGTGAGAATGGCTAAGAGTGGTTTAGCATATATCAAATGCATTGCAGTTATAGTGAAAGCTTTTGGTTGGCAGCGAGTAGTAGCTATATATGAAGATGATGCATATGGAGGAGATCATGGTATGCTAGCACTGCTATCTGAGGCCCTCCACGATATGAGTTCATTGATTGAGTATCACTTAGTTCTTCCGCCTACTTCTTCTCTACATGATCCAGGAGGGTTTATACGTGAAGAGCTGTTGAATTTGTCGCAAACCCAATCTCGCGTGTTCATTGTGCTGCAATCTTCATTAGAAATGGCTATTCATTTGTTTAAAGAAGCCTCAAAAATTGGACTCTTGGACAAAGAATCAGCTTGGATACTCCCAGAGAGCATAACAGATTTGCTGGACTCTGTCAACAAGTCTGCTATTTCCTATATGGATGGAGCTTTAGGAATCAAGAACTACTACTCCGAAATAAGCACTGAGTACCAAGATTTTGAGTCTCAATTCCGGAGAACATTTTGGTATCAGAATGTTGAGGAAGATAACCGCTACCCCGGATTTTATGCATTACAAGCATATGATAGCATTAAACTTGTGACTCAGGCAGTAGACAGGATGAACAGTAGAAACACTAGCAGCCCAAAGAATTTAATAGGAGAAATATTGTCTAGCAGTTTTTTTGGTTTAAGTGGTCATATTCAATTCGAAGATGGGAAACTCCTGCAGAATTCTATTTTAAGGTTAGTAAACGTGGCTGGGAAGAGTTACAAGGAGCTATGCTTTTGGAGTCAACAATATGGGTTCACCACAAACCTCCCTACAGGAGAAGGTGGATATTATGGTGGTGGTAATACAAACTGTTTCAGTGGTGTTCGGTGGCCTGGGAATCTGAAGCAGGATCCAAAAGGCTGGAACATGCCTACTAAACAAAATCCATTGAGAATTGCAGTTCGAAGCAGAACCTCTTTTTCCAAGTTTGTCAAGGTTGATTATGATCACGATGGCAAACGTGCAACATATAGTGGATTTTGTATTGATATTTTTTGGAGTGTGCGTGAGCTTTTGGGGTATGACTTGCCATATCGGTATTATCCCATCGATGGAACCTATAATGATTTGGTTCAGCTTGTCTATAACAAGTTTTCTAATCTTATTCTTATCATATGTTATGATGCCGCCGTTGGGGACATGACCATACTAGAGGAAAGAATGCAGTATGTGGATTTTACAGTGCCATATGCAGAATCAGGATTGACAATGATAGTTCCGTCAAAGTCTGAAGAGTCGGCATGGATATTCACAAAGCCCTTTACCTGGGAACTGTGGATGGTTACAGGTGCCATTTTGATTTACACAATGTTAGCAGTTTGGTACCTTGAGAGAGAATCCAATCCTGAGTTTCATGGTAATTGGAAGAGCCAAATCAGCACAGCTCTTTGGTTTACCTTCTCCTCTTTGTTCTTCGCACATAGGGAAAAAATGAATAGCAACTTAACTCGCATGGTGATGGTCTCATGGCTCTTGCTAGTACTGATCCTTACCTCATGCTACACTGCTAGCCTTTCTTCAATGCTCACAGTTAAAAAACTAAAACCAAATGTCACAGATATTCAGTGGTTGAAGAGGAACAACATGAAAATTGGTTGTGATGGTGACTCATTTGTTAGGTCGTTCCTTGAGAACGTAGAAAAGTTCAAGCCTGAGAACATCATTAATGTTACTGATGAATACAAGTATGATGATGCATTTCAAAATAACAGCATAGCAGCTGCCTTTCTTGAACTTCCATATGAAAAAGTATTCATTAGTGAAGACTGCAACAGCAACCGATACACTGGTTCCACTCCCAGAAACAGATTTGGAGGACTGGGCTTTATGTTCCAGAAAGGCTCGCCATTGGCCAGAGACGTGTCAAAAGCTATATTAAATCTGTCAGAAACGGCAGAGCTGAAAAGGTTGGAAGAGAAGTGGTTATTTACCTCCAACAAGTGCTCCAACATGACCCCTGACACCGACAATACGGAAAGTTTGAAGCTGAGAAGTTTATGGATTCTATATGTCATCTCTGGTGGTACTTCCACCATTTGTGTTCTTCTATCAACCATTCAGTCTCTAGTAAAATACTGTCAAAGCCAATCCGTGGCACCAGAAGACACTGACAACCCAAGTGATCCTAATGCGTGGGAAAAGGTGATTTCACATGCAAAGCAGATGTTCAACAAAAAGATCAATAATTCAAGTGAGGCACAAGAACAGGTTGTAACTGACTGTTCTTCTAGATTGCGTCATGTGAGAATGACCGATTCTCCTGAGCTTCAGCAGGAAATGGCTTCTCCAGTACCTGAAAATTCAACGCTCCCTTCTCCACCACCTGAGGTACACATTACAAATTACAATACAGACTTAGGAATCGCCAAAACTTCAAAGTAG 3495 0.4166 MVDAVHTALSNIGFGDIEIVIAETGWPSRGDTNEVGATVENARAYNGNLIAHLRSMVGTPFMPGKSVDTFIFALYDEDLKPGPASERAFGLYKADLTMAYDVGLDKSSSNHKNPPTSPERETQWCIPKVEVSEAQLQTNIDYICTSQVIDCGPIQPGGACYEPNTVLSHAAFAMNLYYQKVGRNPWNCDFSQTAMLTSQNPMDMNLLFVSGWNTCRVGWFKINTSCALRPILDFQSRHFLPKKSSVDNKVISIGAIIDRNSRIGKEQQVAMEIAARSYNSTSKTFKLAIYFRNSTTDPLTAINLAEEMINKQKMQVIIGMHRWSEAGLVAEIGSQAQVPIIAFAQPTITPPLMAKRWPFLVRMAKSGLAYIKCIAVIVKAFGWQRVVAIYEDDAYGGDHGMLALLSEALHDMSSLIEYHLVLPPTSSLHDPGGFIREELLNLSQTQSRVFIVLQSSLEMAIHLFKEASKIGLLDKESAWILPESITDLLDSVNKSAISYMDGALGIKNYYSEISTEYQDFESQFRRTFWYQNVEEDNRYPGFYALQAYDSIKLVTQAVDRMNSRNTSSPKNLIGEILSSSFFGLSGHIQFEDGKLLQNSILRLVNVAGKSYKELCFWSQQYGFTTNLPTGEGGYYGGGNTNCFSGVRWPGNLKQDPKGWNMPTKQNPLRIAVRSRTSFSKFVKVDYDHDGKRATYSGFCIDIFWSVRELLGYDLPYRYYPIDGTYNDLVQLVYNKFSNLILIICYDAAVGDMTILEERMQYVDFTVPYAESGLTMIVPSKSEESAWIFTKPFTWELWMVTGAILIYTMLAVWYLERESNPEFHGNWKSQISTALWFTFSSLFFAHREKMNSNLTRMVMVSWLLLVLILTSCYTASLSSMLTVKKLKPNVTDIQWLKRNNMKIGCDGDSFVRSFLENVEKFKPENIINVTDEYKYDDAFQNNSIAAAFLELPYEKVFISEDCNSNRYTGSTPRNRFGGLGFMFQKGSPLARDVSKAILNLSETAELKRLEEKWLFTSNKCSNMTPDTDNTESLKLRSLWILYVISGGTSTICVLLSTIQSLVKYCQSQSVAPEDTDNPSDPNAWEKVISHAKQMFNKKINNSSEAQEQVVTDCSSRLRHVRMTDSPELQQEMASPVPENSTLPSPPPEVHITNYNTDLGIAKTSK 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00848 1164 FunFam Glutamate receptor 785 923 - -
Spst6g00848 1164 SUPERFAMILY Periplasmic binding protein-like I 248 659 IPR028082 -
Spst6g00848 1164 Pfam Ligand-gated ion channel 1014 1046 IPR001320 GO:0015276|GO:0016020
Spst6g00848 1164 FunFam glucan endo-1,3-beta-glucosidase 7 119 208 - -
Spst6g00848 1164 Gene3D - 654 784 - -
Spst6g00848 1164 ProSitePatterns Glycosyl hydrolases family 17 signature. 17 30 IPR000490 GO:0004553|GO:0005975
Spst6g00848 1164 Pfam Bacterial extracellular solute-binding proteins, family 3 745 1013 IPR001638 -
Spst6g00848 1164 Gene3D - 246 367 - -
Spst6g00848 1164 CDD PBP1_GABAb_receptor_plant 252 627 IPR044440 -
Spst6g00848 1164 SUPERFAMILY (Trans)glycosidases 1 102 IPR017853 -
Spst6g00848 1164 Gene3D - 785 924 - -
Spst6g00848 1164 Gene3D - 961 1020 - -
Spst6g00848 1164 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 252 1094 IPR015683 -
Spst6g00848 1164 MobiDBLite consensus disorder prediction 1126 1164 - -
Spst6g00848 1164 Gene3D - 369 546 - -
Spst6g00848 1164 SMART GluR_14 669 1015 IPR001320 GO:0015276|GO:0016020
Spst6g00848 1164 Pfam Receptor family ligand binding region 268 594 IPR001828 -
Spst6g00848 1164 Gene3D - 119 208 - -
Spst6g00848 1164 FunFam Glutamate receptor 370 538 - -
Spst6g00848 1164 CDD GluR_Plant 666 1013 - -
Spst6g00848 1164 Gene3D Glycosidases 1 113 - -
Spst6g00848 1164 Pfam X8 domain 123 195 IPR012946 -
Spst6g00848 1164 SUPERFAMILY Periplasmic binding protein-like II 646 1013 - -
Spst6g00848 1164 SMART X8_cls 123 217 IPR012946 -
Spst6g00848 1164 MobiDBLite consensus disorder prediction 1144 1164 - -
Spst6g00848 1164 Pfam Glycosyl hydrolases family 17 1 102 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00848 Spst-Chr6 7735091 7742636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00848 251 1147 Ion Channels AT2G29120 30.562 1.87e-130 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00848 - - gmx:100818619 1471.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00848 6 7735091 7742636 Spst6g00848 6 7735091 7742636 ECH