Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00843 ATGGATATTCATAGTAATCATGGTGCAACTTCTGAAGGGATTCTTGAGAATGTATGGGCCAAAATTATGAGCAGTGATAGAGCAGATGGAAGAAAAGGTGATGCAGCAGAATCTTCTAACTCTTGGGAAGAACTTCCTAACCTTGATGGAAGAGAAGGGTCCATGGAAATTCTACAAAGACTTCCAAGTTTAGGGAGGTGGATATCAATGGGAGCTGATTTCTGGGAAGAAGTTTTAGATGGTATTGTTCTACCAAACACAACCAATACAGAAGATTCTAGCAACAACAATTTGGAAATTGGAGGTGCTGATGAACGTACTAACAGGATGGAAGATGCTGTGAGAACAGAGAAGGCAGTTACAAAACACTACAGAGGAGTAAGGAGAAGGCCTTGGGGTAAATATGCTGCAGAGATTAGAGACTCATCCAAGAAAGGTGCAAGAGTTTGGCTTGGAACATTTGACACGGCTGAAGAAGCTGCTTTGGCTTATGACAAGGCTGCTTTGAAGATTAGGGGTCCAAAGGCATACCTTAACTTCCCACTTGAGAGGGTTACAAAGGCTTTAGGATGTAACAACAAAGGAACTCATCTTACTTGCACGTGCATAGGTAACAAAGAAAATTTGATCAACTCCAGGAAGAGAGAATCAAGGGAAAGGGAAGTGTTTGATGATGATACGATGAATGAACAACCTGCAAGAAAAAAGCTGGAATGCATGGTAGAAAATGAACTAGGTGTTTTTGTATTTCAGGACCTGGGAACTGATTACTTGGACAGTTTGCTGTCTTCTTTTTGA 798 0.411 MDIHSNHGATSEGILENVWAKIMSSDRADGRKGDAAESSNSWEELPNLDGREGSMEILQRLPSLGRWISMGADFWEEVLDGIVLPNTTNTEDSSNNNLEIGGADERTNRMEDAVRTEKAVTKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTAEEAALAYDKAALKIRGPKAYLNFPLERVTKALGCNNKGTHLTCTCIGNKENLINSRKRESREREVFDDDTMNEQPARKKLECMVENELGVFVFQDLGTDYLDSLLSSF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00843 265 PANTHER DNA-BINDING DOMAIN 96 229 IPR044808 GO:0003700|GO:0009873
Spst6g00843 265 Gene3D AP2/ERF domain 122 183 IPR036955 GO:0003700|GO:0006355
Spst6g00843 265 CDD AP2 122 181 IPR001471 GO:0003700|GO:0006355
Spst6g00843 265 MobiDBLite consensus disorder prediction 29 48 - -
Spst6g00843 265 SUPERFAMILY DNA-binding domain 123 182 IPR016177 GO:0003677
Spst6g00843 265 FunFam Ethylene-responsive transcription factor 2 122 183 - -
Spst6g00843 265 Pfam AP2 domain 123 173 IPR001471 GO:0003700|GO:0006355
Spst6g00843 265 SMART rav1_2 123 187 IPR001471 GO:0003700|GO:0006355
Spst6g00843 265 ProSiteProfiles AP2/ERF domain profile. 123 181 IPR001471 GO:0003700|GO:0006355
Spst6g00843 265 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Spst6g00843 265 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00843 Spst-Chr6 7709077 7709874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00843 14 265 AP2-EREBP Transcription Factor Family AT4G18450 37.582 7.50e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst6g00843 AP2 1.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00843 - - gmx:100820226 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00843 6 7709077 7709874 Spst6g00843 6 7709077 7709874 ECH