Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00842 ATGCCAAGTCCAAAACCACTTGACACAGACACACACACCCTTGCCAACCTCCCCTTCCTTCAAAAACCAAGAACAGAGCCTGACATAGAAGCAAACATGGGAAGCAAGAGAAACTACGAAGAAGAAAGCAGGGTCTCGTTTTCCCAAGCCCAAACAGAGTTGTTACCCTTCAACGAGAACGACCCTCAGGACATGGTCATATACCAAGTGCTCAACGAGGCCAATGCTCTCTCTAACACGTTCCTCCCTCACCCAAGGCTCCACCAACCCCAATTGGGCCTCGACCCCACCAGAAACATCGCCAAAAAACACTACAGAGGAGTTCGCCGCCGACCCTGGGGGAAATACGCCGCTGAGATTCGAGACTCCGCGCGCCACGGAGCCAGAATTTGGCTCGGCACATTCCAGACCGCCGAAGAAGCCGCCATGGCTTACGACCGCGCCGCGTTCAAGATGAGAGGCGCCAAGGCTTTGCTGAATTTCCCAGCCGAAATTGTAGCTGCAGCCACAGAGTTATCTTTCAATAATCATCATCATAATAATAATAACAATAATAATAATTACGATGCTGTTTCTGATTCTAGTGCAGGGAGTTCTTGCACCACCAATAATTCCACTCAGGTAAACGGGTCCCGGACAGAAAGCACTAGTAGCACGAGTTAG 663 0.5038 MPSPKPLDTDTHTLANLPFLQKPRTEPDIEANMGSKRNYEEESRVSFSQAQTELLPFNENDPQDMVIYQVLNEANALSNTFLPHPRLHQPQLGLDPTRNIAKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGAKALLNFPAEIVAAATELSFNNHHHNNNNNNNNYDAVSDSSAGSSCTTNNSTQVNGSRTESTSSTS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00842 220 PANTHER DNA-BINDING DOMAIN 61 207 IPR044808 GO:0003700|GO:0009873
Spst6g00842 220 MobiDBLite consensus disorder prediction 177 220 - -
Spst6g00842 220 CDD AP2 103 163 IPR001471 GO:0003700|GO:0006355
Spst6g00842 220 SMART rav1_2 104 168 IPR001471 GO:0003700|GO:0006355
Spst6g00842 220 Gene3D AP2/ERF domain 103 164 IPR036955 GO:0003700|GO:0006355
Spst6g00842 220 FunFam Ethylene-responsive transcription factor 2 103 164 - -
Spst6g00842 220 Pfam AP2 domain 104 154 IPR001471 GO:0003700|GO:0006355
Spst6g00842 220 ProSiteProfiles AP2/ERF domain profile. 104 162 IPR001471 GO:0003700|GO:0006355
Spst6g00842 220 SUPERFAMILY DNA-binding domain 104 164 IPR016177 GO:0003677
Spst6g00842 220 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Spst6g00842 220 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Spst6g00842 220 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00842 Spst-Chr6 7705144 7705806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00842 55 165 AP2-EREBP Transcription Factor Family AT5G47220 47.692 2.80e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst6g00842 AP2 8.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00842 K13433 - gmx:100811533 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00842 6 7705144 7705806 Spst6g00842 6 7705144 7705806 ECH