Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00840 ATGGCTTCTTCTAATAGACACTGGCCAAGCATGTTCAAGTCTAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACTCCTCCCTCATCTCAACTGGTTGCCACAGAAGCCCTTACACTTCAGGTACGGGTTGTGAAGAGAGAAGTCCAGAGCCAAAGCCAAGGTGGAACCCAAAACCTGAGCAAATTCGCATTCTGGAAGCTATATTCAACTCTGGAATGGTGAATCCTCCCAGGGATGAGATAAGAAAGATAAGGGCACAGTTGCAAGAGTATGGTCAAGTGGGTGATGCAAATGTGTTCTATTGGTTTCAGAACCGCAAATCAAGGAGCAAACACAAGCTTCGCCATCTCCAAAACTCAAAAAATCAGAACCTTGAAACTCAACAAAACCCCACTTCTCTCCCTCAAATCACTGCACCCTCATCCTCATCTTCCTCCTCTGAGAAATCTTCTCCAAAAGAATTAATACCCAGCAAGGTATTCTCCATTGGATTCTCGAACATCACTGATGTAGTACCTAATTCTCCAACTACTTCTGTGAACCAGACCTATTTTCAGACTCACAATGAGTCTTCTATGCTTTCACTACCACCACCTGCTGCTGCTGCCGCACCAACTGGGGCGTTCTTCTTCCCAGTGCAACATCATGGGCAGGGAGTAGCACCTAGTACGGTGACAACACAAGGCTTTTGCTTCTCTGAGCTGTCCAATGTTGTTCAACTGCAATCACATGCTCAACATAACGTTGGTCCTTGCACTAGTCTCTTGCTCAGTGAGATCGTAGGCCATGGTGCTGCTGCATCAAAGAAAGATCTAGAACAAGACAAGTCTCTGAAAATAATGCACCAGCCCTCACTGCTTAATTTCTGTGTCACTCCCATAACAACAGCTCCTACTACTACCACTGTTGTATCTCCCATCACTACCTCAACCACCACTGTTCTATCCCCCGTCATTGCTCAAGTTCAAGGCATGGTGGGAGATCCAGCTGCTGCGGCGAGATCAACGGTGTTCATTAACGATGTGGCATTCGAGGTAGCGGTGGGGCCTTTCAATGTTCGTGAAGCTTTTGGAGATGATGCTGTGCTCATCCATGCCACTGGTCAACCTGTGCTAACAAATCAATGGGGTGTCACTCTTCATTCTCTCCAGCATGGTGCATGTTATTATTTGGTGCGCACATTAGCCCTGCTTCTGTTGCAATAA 1215 0.4691 MASSNRHWPSMFKSKPCNPHHQWQHDINSSLISTGCHRSPYTSGTGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNQNLETQQNPTSLPQITAPSSSSSSSEKSSPKELIPSKVFSIGFSNITDVVPNSPTTSVNQTYFQTHNESSMLSLPPPAAAAAPTGAFFFPVQHHGQGVAPSTVTTQGFCFSELSNVVQLQSHAQHNVGPCTSLLLSEIVGHGAAASKKDLEQDKSLKIMHQPSLLNFCVTPITTAPTTTTVVSPITTSTTTVLSPVIAQVQGMVGDPAAAARSTVFINDVAFEVAVGPFNVREAFGDDAVLIHATGQPVLTNQWGVTLHSLQHGACYYLVRTLALLLLQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00840 404 FunFam WUSCHEL-related homeobox 11 55 122 - -
Spst6g00840 404 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Spst6g00840 404 SMART HOX_1 53 120 IPR001356 GO:0003677
Spst6g00840 404 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Spst6g00840 404 CDD homeodomain 54 116 IPR001356 GO:0003677
Spst6g00840 404 MobiDBLite consensus disorder prediction 124 156 - -
Spst6g00840 404 Gene3D - 55 121 - -
Spst6g00840 404 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Spst6g00840 404 MobiDBLite consensus disorder prediction 39 62 - -
Spst6g00840 404 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 396 IPR044557 GO:0003700|GO:0050793
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00840 Spst-Chr6 7670370 7672488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00840 1 395 Wox Gene Family AT5G45980 38.539 1.51e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Spst6g00840 Homeodomain 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00840 - - pvu:PHAVU_006G179900g 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00840 6 7670370 7672488 Spst6g00840 6 7670370 7672488 ECH